FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008147472

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008147472
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24638
Total Bases3.5 Mbp
Sequences flagged as poor quality0
Sequence length140-145
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCTGTCTCTCTTTGATGGAATCGCTACAGGGCTCCTGGTGCTGAAGGA1690868.62570013799821No Hit
GGTGTTTGGGATGGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCA14425.852747787969802No Hit
GCAAAAGTTCTCAGGGATGTCCAACCCTGTGATGATTGATGCTTACGCAG8263.3525448494195955No Hit
CTCCAAGTAACGGTGCTGTCTGCTGGCTGGTGCAGGGCTCCTGGTGCTGA4251.7249776767594773No Hit
GTGCTGTCTCTCTTTGATGGTGCTGTCTCTCTTTGATGGTGCTGTCTCTC3271.3272181183537626No Hit
GTGCTGTCTCTCTTGATGGAATCGCTACAGGGCTCCTGGTGCTGAAGGAC2761.1202207971426252No Hit
GTGCTGTCTCTCTTTGATGGTGCCTCCTTCTCTTTTGGTTGTTACGCAGA1530.6209919636334118No Hit
GCAAAAGTTCTCAGGGATGTGAAGCACCGCCAGGTCCTTTGAGTTTTAAG1460.5925805666044321No Hit
GCAAAAGTTCTCAGGGATGTCGGTGCCTCCTTCTCTTTTGGTTGTTACGC1160.4708174364802338No Hit
GTGCTGTCTCTCTTTGATGGATCGCTACAGGGCTCCTGGTGCTGAAGGAC1020.4139946424222746No Hit
GTGCTGTCTCTCTTTGATGGTGCTGTCTCTCTTTGATGGTGCCTCCTTCT720.29223151229807615No Hit
GCAAAAGTTCTCAGGGATGTCCATCACTTTCTGAACTGTCTGTGTGCTCG590.23946748924425684No Hit
GTGCTGTCTCTCTTTATGGAATCGCTACAGGGCTCCTGGTGCTGAAGGAC570.23134994723597696No Hit
TGCTGTCTCTCTTTGATGGAATCGCTACAGGGCTCCTGGTGCTGAAGGAC560.227291176231837No Hit
GTGCTGTCTCTCTTTGATGGAGAGGGTAAAGGGCTCCTGGTGCTGAAGGA550.22323240522769705No Hit
GCAAAAGTTCTCAGGGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTA530.21511486321941714No Hit
GTGCTGTCTCTTTTGATGGAATCGCTACAGGGCTCCTGGTGCTGAAGGAC520.2110560922152772No Hit
GTGCTGTCTCTCTTTGAGGAATCGCTACAGGGCTCCTGGTGCTGAAGGAC510.2069973212111373No Hit
GCAAAAGTTCTCAGGGATGTCCCATCACTTTCTGAACTGTCTGTGTGCTC490.19887977920285738No Hit
GTGCTGTCTCTCTTTGATGGAATCGCTACAGGACTCCTGGTGCTGAAGGA440.17858592418215763No Hit
GTGCTGTCTCTCTTTGTGGAATCGCTACAGGGCTCCTGGTGCTGAAGGAC440.17858592418215763No Hit
GTGCTGTCTCTCTTTGATGGAATCGCTACGGGGCTCCTGGTGCTGAAGGA430.1745271531780177No Hit
GTGCTGTCTCTCTTGGATGGAATCGCTACAGGGCTCCTGGTGCTGAAGGA430.1745271531780177No Hit
GTGCTGTCTCTCTTTGATGGAATCGCTACAGGGCTCCTGGTGCTGAGGGA430.1745271531780177No Hit
GTGCTGTCCTCTTTGATGGAATCGCTACAGGGCTCCTGGTGCTGAAGGAC420.17046838217387775No Hit
GTGCTGTCTCTCTTTGATGGAATCGCTACAGGGCTCCTGGTGTTGAAGGA360.14611575614903807No Hit
GTGCTGTCTCTCTTTGATGGAATCGCTACAGGGCTCCTGGTGCTGAAGGG350.14205698514489812No Hit
GTGCTGTCTCTCTTTGATGAATCGCTACAGGGCTCCTGGTGCTGAAGGAC350.14205698514489812No Hit
GCAAAAGTTCTCAGGGATGTCGTCATCGTGGAGCGTGGGAAGGGCGACGG340.13799821414075816No Hit
GTGCTGTTCTCTTTGATGGAATCGCTACAGGGCTCCTGGTGCTGAAGGAC330.13393944313661824No Hit
GTGCCTCCTTCTCTTTTGGTTGTTACGCAGACCAAGTCTCTGCTACCGTA310.12582190112833833No Hit
GCAAAAGTTCTCAGGGATGTCCTGATCCAACATCGAGGTCGTAAACCCTA300.12176313012419838No Hit
GTGCTGTCTCCTTTGATGGAATCGCTACAGGGCTCCTGGTGCTGAAGGAC300.12176313012419838No Hit
GCAAAAGTTCTCAGGGATGTCCGGCCCGGCAGGCTGGCCTGAGGCCTTCT290.11770435912005844No Hit
GTGCTGTCTCTCTTTGATGGAATCACTACAGGGCTCCTGGTGCTGAAGGA280.1136455881159185No Hit
GTGCTGCCTCTCTTTGATGGAATCGCTACAGGGCTCCTGGTGCTGAAGGA280.1136455881159185No Hit
GTGCTGTCTCTCTTTGATGGAATCGCTACAGGGCTCCCGGTGCTGAAGGA270.10958681711177856No Hit
GTGCTGTCTCTCTTTGATGGAACCGCTACAGGGCTCCTGGTGCTGAAGGA260.1055280461076386No Hit
GTGCGTCTCTCTTTGATGGAATCGCTACAGGGCTCCTGGTGCTGAAGGAC260.1055280461076386No Hit
GTGCTGTCTCTCTTTGATGGAATCGATACAGGGCTCCTGGTGCTGAAGGA260.1055280461076386No Hit
GTGCTGTCTTCTTTGATGGAATCGCTACAGGGCTCCTGGTGCTGAAGGAC260.1055280461076386No Hit
GCAAAAGTTCTCAGGGATGTCGGCAGAGGCCCAACAATGGGCTGGCCTCT260.1055280461076386No Hit
GCAAAAGTTCTCAGGGATGTCAAAGCCACTTTCGTAGTCTATTTTGTGTC250.10146927510349865No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)