FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008147482

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008147482
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences704
Total Bases102 kbp
Sequences flagged as poor quality0
Sequence length140-145
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTGTTTGGGATGGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCA47066.76136363636364No Hit
CTCCAAGTAACGGTGCTGTCTGCTGGCTGGTGCAGGGCTCCTGGTGCTGA182.556818181818182No Hit
CTCCAAGTAACGGTGCGGCCACTGATAGGATTACGCAGACCAAGTCTCTG182.556818181818182No Hit
CTCCAAGTAACGGTGCTGCCACTGATAGGATTACGCAGACCAAGTCTCTG152.130681818181818No Hit
GCAAAAGTTCTCAGGGATGTCCTATTGCTAAGTGGGTGGTTCGCAGAAGC152.130681818181818No Hit
GTGCTGTCTCTCTTTGATGGAATCGCTACAGGGCTCCTGGTGCTGAAGGA121.7045454545454544No Hit
GTGCTGTCTCTCTTTGATGGTGCTGTCTCTCTTTGATGGTGCTGTCTCTC111.5625No Hit
GTGCTGTCTCTCTTTGATGGTGCCTCCTTCTCTTTTGGTTGTTACGCAGA70.9943181818181818No Hit
GGTGTTGGGATGGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCAG60.8522727272727272No Hit
GGTGTTTGGATGGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCAG40.5681818181818182No Hit
GTGCTGTCTCTCTTTGATGGTGCTGTCTCTCTTTGATGGTGCCTCCTTCT40.5681818181818182No Hit
GCAAAAGTTCTCAGGGATGTCCTATTGCTAAGTGGGAGAACTTGCGCCTG30.4261363636363636No Hit
CTCCAAGTAACGGTGCTGTCTCTCTTTGATGGACACCAGTTTTAGCCAAC30.4261363636363636No Hit
GGTGTTTGGGATGGAATGGTGATCCACGCAGGTGGTCCGCAGAAGCAGCA30.4261363636363636No Hit
GGTGTTTGGGATGGAATGGTGACCCACGCAGGTGGTTCGCAGAAGCAGCA30.4261363636363636No Hit
GTGTTTGGGATGGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCAG20.2840909090909091No Hit
GCAAAAGTTCTCAGGGATGTGAGGACCACCCATGTACTCTGCGTTGATAC20.2840909090909091No Hit
GGTGTTTGGGATGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCAG20.2840909090909091No Hit
GGTGTTTGGGTGGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCAG20.2840909090909091No Hit
GGTGTTTGGGATGGAATGGTGATCCACGCATGTGGTTCGCAGAAGCAGCA20.2840909090909091No Hit
CTCCAAGTAACGGTGCTGTCTCTTCACCCTTTGCCCTTACGCAGACCAAG20.2840909090909091No Hit
CTCCAGTAACGGTGCGGCCACTGATAGGATTACGCAGACCAAGTCTCTGC20.2840909090909091No Hit
CTCCAAGTAACGGTGCTGTCACTGATAGGATTACGCAGACCAAGTCTCTG20.2840909090909091No Hit
CTCCAAGTAACGGTGCTGTCTCTCTTTGCGGCCACTGATAGGATTACGCA20.2840909090909091No Hit
CTCCAAGTAACGGTGCTGTCACCCTTTGCCCTTACGCAGACCAAGTCTCT20.2840909090909091No Hit
GGTGTTAGGGATGGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCA10.14204545454545456No Hit
CCCAAGTAACGGTGCTGCCACTGATAGGATTACGCAGACCAAGTCTCTGC10.14204545454545456No Hit
GGTGTTTGGGATGGATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCAG10.14204545454545456No Hit
CTCCAAGCAACGGTGCTGCCACTGATAGGAATACGCAGACAAAGTCTCTG10.14204545454545456No Hit
CTCCAAGTAAGGTGCTGCCACTGATAGGATTACGCAGACCAAGTCTCTGC10.14204545454545456No Hit
GGTGTTTGGGATGGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGGA10.14204545454545456No Hit
CTCCAAGTACGGTGCGGCCACTGATAGGATTACGCAGACCAAGTCTCTGC10.14204545454545456No Hit
GGTGTTTGGGATGGAATGGTGATCCACGCAAGTGGTTCGCAGAAGCAGCA10.14204545454545456No Hit
GGTGTTTGTGATGGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCA10.14204545454545456No Hit
CTCCAAGTAACGGTGCTGTCGCCCCCGCCCCCCCCGCCCCGGCCCGTCCA10.14204545454545456No Hit
CTCAAGTAACGGTGCTGCCACTGATAGGATTACGCAGACCAAGTCTCTGC10.14204545454545456No Hit
GCAAAAGTTCTCAGGGATGTCCGGGCAGGTGCCCACGATCTGCAGCTCCT10.14204545454545456No Hit
CTCAAGTAACGGTGCGGCCACTGATAGGATTACGCAGACCAAGTCTCTGC10.14204545454545456No Hit
GGTGTTTGGGATGGAATGGTGATCCACGCAGGTGGTTCGTAGAAGCAGCA10.14204545454545456No Hit
GGTGTTTGGGATGGAATGGTGATCCACGCAGGTGGTTCGCAGAAGTAGCA10.14204545454545456No Hit
GCAAAAGTTCTCAGGGATGTTAAAGCCACTTTCGTAGTCTATTTTGTGTC10.14204545454545456No Hit
GCAAAAGTTCTCAGGGATGTCCCCATGTACTCTGCGTTGATACCACTGCT10.14204545454545456Clontech SMART CDS Primer II A (96% over 25bp)
GGTGTTTGGGATGGAATGGTGATCCACGCGGGTGGTTCGCAGAAGCAGCA10.14204545454545456No Hit
GTGCTGTCTCTCTTTGATGGTGCTGTCTCTCTTTGAAGGTCATCCCCAAG10.14204545454545456No Hit
GTGCTGTCTCTCTTTGATGGAATTTCTCTAGCTTCTCCCGTTTCTTTGCC10.14204545454545456No Hit
CTCCAAGTAACGGTGCTGTCTCTCTTGAGAGGGTAAAGGGCTCCTGGTGC10.14204545454545456No Hit
CTCCAAGTAACGGTGCTGTCTCTCTCTCACCCTTTGCCCTTACGCAGACC10.14204545454545456No Hit
GTGCTGTCTCTCTTTGATGAGGTGCTGTCTCTCTTTGATGGGGTGCAGAC10.14204545454545456No Hit
GGTGTTTGGGACACTGACGACATGGTTCTACATAGAGGCTCCAAGTAACG10.14204545454545456No Hit
GGTGTTTGGGATGGAATGGTGATCCACGCAGGTGGCTCGCAGAAGCAGCA10.14204545454545456No Hit
AGTGTTTGGGATGGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCA10.14204545454545456No Hit
GGTGTTTGGGATGGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCGGCA10.14204545454545456No Hit
CTCCAAGTACGGTGCTGCCACTGATAGGATTACGCAGACCAAGTCTCTGC10.14204545454545456No Hit
CTCCAAGTAACGGTGCTGTCTCTCTTCACCCTTTGCCCTTACGCAGACCA10.14204545454545456No Hit
GGTGTTTGGGATGGATTGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCA10.14204545454545456No Hit
GCAAAAGTTCTCAGGGATGTCGCGGTGAGTTCAGGCTTTTTCATGGTTTA10.14204545454545456No Hit
GCAAAAGTTCTCAGGGATGTCCAAGAAAAAGAGAGGCCCCAGATCTCATG10.14204545454545456No Hit
GTGCTGTCTCTCTTTGACGGTCATCCCCAAGCAGCTGCGTTGATACCACT10.14204545454545456No Hit
GGTGTTTGGGATGGAATGGCGATCCACGCAGGTGGTTCGCAGAAGCAGCA10.14204545454545456No Hit
CTCCAATAACGGTGCTGTCTCTCTTTGATGGACACCAGTTTTAGCCAACA10.14204545454545456No Hit
GTGCTGTCTCTCTTTGATGGTGCTGTCTCTCTTTGATGGTGCTGTCTCTA10.14204545454545456No Hit
CTCCAAGTAACGGTGCTGTTTCTCTTCACCCTTTGCCCTTACGCAGACCA10.14204545454545456No Hit
GGTGTTTGGGATTGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCA10.14204545454545456No Hit
GGTGTTTGGGATGGAATGGTGATCCACGCAGGCGGTTCGCAGAAGCAGCA10.14204545454545456No Hit
GGTGTTTGGGATGGAATGGTGATCCACGCAGGTGGTTCGCAAAAGCAGCA10.14204545454545456No Hit
GGTGTTTGGGATAGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCA10.14204545454545456No Hit
CTCCAAGTAACGGTGCTGTCGATGAGCACGATGCAATTCTTCACCAGGGT10.14204545454545456No Hit
CTCCAAGTACGGTGCTGTCTGCTGGCTGGTGCAGGGCTCCTGGTGCTGAA10.14204545454545456No Hit
GTGCTGTCTCTCTTTGATGGTGACTCCTTCTCTATTGGTTGTTACGCAGA10.14204545454545456No Hit
CTCCAAGTAACGGTGCTGTCTGCTGGCTGGTGCGGAGCTCCTGGTGCTGA10.14204545454545456No Hit
CTCCAAGTAACGGTGCGCCACTGATAGGATTACGCAGACCAAGTCTCTGC10.14204545454545456No Hit
GGTGTTTGGGATGGAATGGTGATCCACACAGGTGGTTCGCAGAAGCAGCA10.14204545454545456No Hit
GTGCTGTCTCTCTTTGATGGATGTGCTGTCTCTCTTTGATGGATGTGCTG10.14204545454545456No Hit
GGTGTTTGGGATGGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCG10.14204545454545456No Hit
GGTGTTTGGGATGGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCTGCA10.14204545454545456No Hit
CTCCAAGTAACGGTGCTGAGAAAGCAGAAATGAGTTCAGCAAAGTGAGGA10.14204545454545456No Hit
CTCCAAGTAATGGTGCTGTCTGCTGGCTGGTGCAGGGCTCCTGGTGCTGA10.14204545454545456No Hit
GGTGGTTGGGATGGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCA10.14204545454545456No Hit
GTGCTGTCTCTCTTTGTGGAATCGCTACAGGGCTCCTGGTGCTGAAGGAC10.14204545454545456No Hit
GCAAAAGTTCTCAGGGATGTCCTCTTGCTAAGTGGGTGGTTCGCAGAAGC10.14204545454545456No Hit
CTCCAGTAACGGTGCTGCCACTGATAGGATTACGCAGACCAAGTCTCTGC10.14204545454545456No Hit
GGCTGTCTCTCTTTGATGGTGCCTCCTTCTCTTTTGGTTGTTACGCAGAC10.14204545454545456No Hit
CTCAAGTACGGTGCTGTCTGCTGGCTGGTGCAGGGCTCCTGGTGCTGAAG10.14204545454545456No Hit
CTCCAAGTAACGGTGCTGCCACTGATAGGATTACGCAGACAAAGTCTCTG10.14204545454545456No Hit
GTGCTGTCTCTTGATGGAATCGCTACAGGGCTCCTGGTGCTGAAGGACTT10.14204545454545456No Hit
CTCCAAGTAACGGTGCGGCAACTGATAGGATTACGCAGACCAAGTCTCTG10.14204545454545456No Hit
GTGCTGTCTCTCTTTGATGGTGCTGTCTCTCTTTGATGGTGCTGTCTCGC10.14204545454545456No Hit
GGTGTTTGGGATGGAATGGTGATCCACGCAGGTGGTTCGCGGAAGCAGCA10.14204545454545456No Hit
GGTGTTTGGGATGGAATGGTGATCCGCGCAGGTGGTTCGCAGAAGCAGCA10.14204545454545456No Hit
CTCCAATAACGGTGCTGTCTGCTGGCTGGTGCAGGGCTCCTGGTGCTGAA10.14204545454545456No Hit
GGTGTTTGGGATGGAATGGTATCAACGCAGGTGGTTCGCAGAAGCAGCAG10.14204545454545456No Hit
CTCCAAGTAAGGTGCTGTCTGCTGGCTGGTGCAGGGCTCCTGGTGCTGAA10.14204545454545456No Hit
GGTGTTTGGGATGTAATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCA10.14204545454545456No Hit
CTCCAAGTAACGGTGCTGCCACTGTAGGATTACGCAGACCAAGTCTCTGC10.14204545454545456No Hit
GGTGTTTGGGGATGGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGC10.14204545454545456No Hit
CTCCAAGTAACGGTGCTGATAGGATTACGCAGACCAAGTCTCTGCTACAG10.14204545454545456No Hit
GTGCTGTCTCTCTTTGATGGACTCTGCGTTGATACCACTGCTTCCATGTA10.14204545454545456Clontech Universal Primer Mix Long (96% over 25bp)
GGTGTTTGGGATGGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCCGCA10.14204545454545456No Hit
GCAAAAGTTCTCAGGGATGTGTCATCCCCAAGCAGCTTAGGGACCCCCAT10.14204545454545456No Hit
GCAAAAGTTCCAGGGATGTGAGGACCACCCATGTACTCTGCGTTGATACC10.14204545454545456No Hit
GGTGTTTGGGATGGAATGGTCATCCACGCAGGAGGTTCGCAGAAGCAGCA10.14204545454545456No Hit
CTCCAAGTAACGGTGCTGTTTCTCTTACCCTTTGCCCTTACGCAGACCAA10.14204545454545456No Hit
GTGCTGTCTCTCTTTGATGGGTGCCTCCTTCTCTTTTGGTTGTTACGCAG10.14204545454545456No Hit
GCAAAAGTTCTTCAGGGATGTCCTATTGCTAAGTGGGTGGTTCGCAGAAG10.14204545454545456No Hit
CTCCAAGTAACGGTGCTTTCTCTTCGCCCTTTACCCTTACGCAGACCAAG10.14204545454545456No Hit
GGTGTTTGGGATGGAATGGTGCGGCCACTGATAGGATTACGCAGACCAAG10.14204545454545456No Hit
CTCCAAGTAACGGTGCTGTCTGCTGGCTGGTGCAGGGCTCTTGGTGCTGA10.14204545454545456No Hit
GGTGTTTGGGATGGAATGGTGATCCACGCAGGTGGTTCGCAGAGGCAGCA10.14204545454545456No Hit
GGTGTTTGGGATGGTATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCA10.14204545454545456No Hit
GCAAAAGTTCTCAGGGATGTCGCGTGAGTCAGGCTTTTTCATGGTTTAGT10.14204545454545456No Hit
GTGCTGTCTCTCTTTGATGGTCATCCCCAAGCAGCTGCGTTGATACCACT10.14204545454545456No Hit
GGTGTTTGGGATGGAATGGTGGGAAGGAGGGAGGGAGGGAGGGAGGGGCT10.14204545454545456No Hit
CTCCAAGTAACGGTGCTGTCTGCTGGCTGGTGCAGGGCTCCTGGAGCTGA10.14204545454545456No Hit
GGTGTTTGGGATGGAATGGAGGTCCACGCAGGTGGTTCGCAGAAGCAGCA10.14204545454545456No Hit
GCAAAAGTTCTCAGGGATGTCCGTGCCTCCTTCTCTTTTGGTTGTTACGC10.14204545454545456No Hit
CTCCAAGTAACGGTGCTGCCACTGATAGTATTACGCAGACCAAGTCTCTG10.14204545454545456No Hit
GGTGTTTGGGATGGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCATCA10.14204545454545456No Hit

[FAIL]Adapter Content

Adapter graph