FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008147548

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008147548
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3733
Total Bases541 kbp
Sequences flagged as poor quality0
Sequence length140-145
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTGTTTGGGATGGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCA74820.037503348513262No Hit
GCAAAAGTTCTCAGGGATGTCGGTGCCTCCTTCTCTTTTGGTTGTTACGC58115.563889633002947No Hit
GTGCTGTCTCTCTTTGATGGTGCTGTCTCTCTTTGATGGTGCTGTCTCTC45812.268952585052237No Hit
CTCCAAGTAACGGTGCTGTCTGCTGGCTGGTGCAGGGCTCCTGGTGCTGA3509.375837128315029No Hit
GTGCTGTCTCTCTTTGATGGTGCCTCCTTCTCTTTTGGTTGTTACGCAGA1915.116528261451915No Hit
GTGCTGTCTCTCTTTGATGGTGCTGTCTCTCTTTGATGGTGCCTCCTTCT1293.4556656844361107No Hit
GCAAAAGTTCTCAGGGATGTGAAGCACCGCCAGGTCCTTTGAGTTTTAAG782.0894722743102063No Hit
GCAAAAGTTCTCAGGGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTA571.5269220466113045No Hit
GCAAAAGTTCTCAGGGATGTCCGAGATAAACTGTTCCACGCCCCCAGCCA381.017948031074203No Hit
GTGCCTCCTTCTCTTTTGGTTGTTACGCAGACCAAGTCTCTGCTACCGTA290.7768550763461024No Hit
GTGCTGTCTCTCTTTTGGTTGTTACGCAGACCAAGTCTCTGCTACCGTAT280.7500669702652022No Hit
GCAAAAGTTCTCAGGGATGTCGGAAGAATAGGGCGTGGCAGCCACCAGAG250.669702652022502No Hit
CTCCAAGTAACGGTGCGGCCACTGATAGGATTACGCAGACCAAGTCTCTG240.6429145459416019No Hit
CTCCAAGTAACGGTGCTGCCACTGATAGGATTACGCAGACCAAGTCTCTG230.6161264398607018No Hit
GCAAAAGTTCTCAGGGATGTCCTGGGGAACTGGGAGGTGGTCCAGGGGCC210.5625502276989017No Hit
GCAAAAGTTCTCAGGGATGTGAGGACCACCCATGTACTCTGCGTTGATAC190.5089740155371015No Hit
GCAAAAGTTCTCAGGGATGTCCTGATCCAACATCGAGGTCGTAAACCCTA150.4018215912135012No Hit
GCAAAAGTTCTCAGGGATGTCCTCCTTCTCTTTTGGTTGTTACGCAGACC140.3750334851326011No Hit
GCAAAAGTTCTCAGGGATGTGGTGCCTCCTTCTCTTTTGGTTGTTACGCA130.34824537905170105No Hit
GCAAAAGTTCTCAGGGATGTCGGTGCCTCCTTCTCTTTGGTTGTTACGCA120.32145727297080096No Hit
GTGCTGTCTCTCTTTGATGGTGCTGTCTCTCTTTGATGGTGCTGTCTCGC110.29466916688990086No Hit
GTGCTGTCTCTCTTTGGTTGTTACGCAGACCAAGTCTCTGCTACCGTATC110.29466916688990086No Hit
GCAAAAGTTCTCAGGGATGTCCGTGCCTCCTTCTCTTTTGGTTGTTACGC110.29466916688990086No Hit
GCAAAAGTTCTCAGGGATGTCTGAGATAAACTGTTCCACGCCCCCAGCCA100.26788106080900076No Hit
GGTGTTTGGATGGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCAG90.24109295472810074No Hit
GTGCTGTCTCTCTTTGATGGGTGCTGTCTCTCTTTGATGGGTGCTGTCTC90.24109295472810074No Hit
GCAAAGTTCTCAGGGATGTCGGTGCCTCCTTCTCTTTTGGTTGTTACGCA80.21430484864720067No Hit
GCAAAAGTTCTCAGGGATGTCGGTGCCTCCTCTCTTTTGGTTGTTACGCA80.21430484864720067No Hit
GCAAAAGTTCTCAGGGATGTCGCGGTGAGTTCAGGCTTTTTCATGGTTTA70.18751674256630055No Hit
GGTGTTTGGGATGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCAG70.18751674256630055No Hit
GCAAAAGTTCTCAGGGATGTCCAGTGTCTGATCAGTACTCTCATCATCTC70.18751674256630055No Hit
GTGCTGTCTCTCTTTGATGGTGCCTCCTCTCTTTTGGTTGTTACGCAGAC70.18751674256630055No Hit
GCAAAAGTTCTCAGGGATGTCGGTGCCTCCTTCCTTTTGGTTGTTACGCA70.18751674256630055No Hit
CTCCAGTAACGGTGCTGTCTGCTGGCTGGTGCAGGGCTCCTGGTGCTGAA60.16072863648540048No Hit
CTCCAAGTACGGTGCTGTCTGCTGGCTGGTGCAGGGCTCCTGGTGCTGAA60.16072863648540048No Hit
GCAAAAGTTCTCAGGATGTCGGTGCCTCCTTCTCTTTTGGTTGTTACGCA60.16072863648540048No Hit
GCAAAAGTTCTCAGGGATGTCCCTCTGTGTTATTTTTTTTCTTCGTTGCC50.13394053040450038No Hit
CTCCAAGTAACGGTGCTGTCTCTCTTCACCCTTTGCCCTTACGCAGACCA50.13394053040450038No Hit
CAAAAGTTCTCAGGGATGTCGGTGCCTCCTTCTCTTTTGGTTGTTACGCA50.13394053040450038No Hit
GCAAAAGTTCTCAGGGATGTGTTAAAGCCACTTTCGTAGTCTATTTTGTC50.13394053040450038No Hit
GTGCTGTCTCTCTTTGATGGTGCTGTCTCTCTTTGATGGTGCTGTCTCTA50.13394053040450038No Hit
CTCCAAGTAACGGTGCTGTCACTGATAGGATTACGCAGACCAAGTCTCTG50.13394053040450038No Hit
GCAAAAGTTCTCAGGGATGTTGGTGCCTCCTTCTCTTTTGGTTGTTACGC50.13394053040450038No Hit
GCAAAAGTTCTCAGGGATGTCGGTGCCTCTTCTCTTTTGGTTGTTACGCA50.13394053040450038No Hit
GCAAAAGTTCTCAGGGATGTGTGTGTCATACAACCTATCCAAAGAGCCTT40.10715242432360034No Hit
CTCAAGTAACGGTGCTGTCTGCTGGCTGGTGCAGGGCTCCTGGTGCTGAA40.10715242432360034No Hit
GCAAAAGTTCTCAGGGATGTCGGTGCCTCCTTCTCTTTTGTTGTTACGCA40.10715242432360034No Hit
CTCCAAGTAACGTGCTGTCTGCTGGCTGGTGCAGGGCTCCTGGTGCTGAA40.10715242432360034No Hit
GCAAAAGTTCTCAGGGATGTCTCCTTCTCTTTTGGTTGTTACGCAGACCA40.10715242432360034No Hit
GCAAAAGTTCTCAGGGATGTGGAGCAAAACCCCAGCCCCACTGTTGGGCA40.10715242432360034No Hit
CTCCAAGTAACGGTGCTGTTTCTCTTCACCCTTTGCCCTTACGCAGACCA40.10715242432360034No Hit
CTCCAAGTAACGGTGCTGTCTCTCTTTGCGGCCACTGATAGGATTACGCA40.10715242432360034No Hit
GCAAAAGTTCTCAGGGATGTCGTGCCTCCTTCTCTTTTGGTTGTTACGCA40.10715242432360034No Hit
GTGCTGTCTCTCTTTGATGGACCACAGCTTGCATAATTGTTGTTTATCAC40.10715242432360034No Hit
GTGCTGTCTCTCTTTGATGGAAAGTGCCTCCTTCTCTTTTGGTTGTTACG40.10715242432360034No Hit
GCAAAAGTTCTCAGGGATGTGGATGGAAGCATGGTGCCTCCTTCTCTTTT40.10715242432360034No Hit
GTGCTGTCTCTCTTTGATGGTACTGTCTCTCTTTGATGGTGCTGTCTCTC40.10715242432360034No Hit
CTCCAAGAACGGTGCTGTCTGCTGGCTGGTGCAGGGCTCCTGGTGCTGAA40.10715242432360034No Hit
GTGCTGTCTCTCTTTGATGGTGCTGTCTCTCTTTGATGGTGCTGCCTCTC40.10715242432360034No Hit
GGTGTTTGGGATGGAATGGTGATCCACGCAGGTGGTTCACAGAAGCAGCA40.10715242432360034No Hit
CTCCAAGTAACGGTGCTGTCACCCTTTGCCCTTACGCAGACCAAGTCTCT40.10715242432360034No Hit
GTGCTGTCTCTCTTTGATGGTGCTGTCTCTCTTTGATGGTGCTGTCTATC40.10715242432360034No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)