FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008147667

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008147667
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416
Total Bases60.1 kbp
Sequences flagged as poor quality0
Sequence length141-145
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTATCAGTGGCCGCAAAGAGGGGAGAGGCCCTGGGCTTCACTTACTCT15837.980769230769226No Hit
GGGCAAAGGGTGAAGAGAAAGAGGGCAAATGAACAAAATGAAAGGAGGCA409.615384615384617No Hit
GCATCAATCATCACAGGGTTGGACTCGAGAAATCGCGAGATGTCCCTCTT348.173076923076923No Hit
GCATCAATCATCACAGGGTACATGGGAAGCAGTGGTATCAACGCAGAGTA296.971153846153847Clontech SMARTer II A Oligonucleotide (100% over 24bp)
CAACCAAAAGAGAAGGAGGCACCATCAAAGAGAGACAGCACCCTCTATGT153.6057692307692304No Hit
CAACCAAAAGAGAAGGAGGCACCATCAAAGAGAGACAGCACCATCAAAGA143.3653846153846154No Hit
GCATCAATCATCACAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTA92.1634615384615383Clontech Universal Primer Mix Long (96% over 26bp)
TCCTATCAGTGGCCGCACCGTTACTTGGAGCCTCTATGTAGAACCATGTC51.201923076923077No Hit
TCCTATCAGTGGCAGCACCGTTACTTGGAGCCTCTATGTAGAACCATGTC51.201923076923077No Hit
CAACCAAAAGAGAAGGAGGCAGTGGTATCAACGCAGAGTACATGGGAAGC51.201923076923077Clontech SMARTer II A Oligonucleotide (96% over 25bp)
GCATCAATCATCACAGGGTACATGGAAGCAGTGGTATCAACGCAGAGTAC51.201923076923077Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CAACCAAAAGAGAGACAGCACCCTCTATGTAGAACCATGTCGTCAGTGTA30.7211538461538461No Hit
TCCTATCAGTGACAGCACCGTTACTTGGAGCCTCTATGTAGAACCATGTC30.7211538461538461No Hit
GCATCAATCATCACAGGGTTGGAAGCAGTGGTATCAACGCAGAGTACATG30.7211538461538461Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GGGCAAAGGTGAAGAGAAAGAGGGCAAATGAACAAAATGAAAGGAGGCAA30.7211538461538461No Hit
TCCTATCAGTGGCCGCAAAGAGGGGAGAGGCCCCGGGCTTCACTTACTCT20.4807692307692308No Hit
CAACCAAAAGAGAAGGAGGCAGTGGTATCAACGCAGAGTACATGGAAGCA20.4807692307692308Clontech SMARTer II A Oligonucleotide (96% over 25bp)
GGGCAAAGGGTGAAGAGAAACAGCACCGTTACTTGGAGCCTCTATGTAGA20.4807692307692308No Hit
GCATCAATCATCACAGGGTACATGGGAAGCAGTGGGTATCAACGCAGAGT20.4807692307692308No Hit
CAACCAAAAGAGAAGGAGGCACCCTCTATGTAGAACCATGTCGTCAGTGT20.4807692307692308No Hit
GCATCAATCATCACAGGGTTCAGCAAAGTGAGGACCACCGAAGCAGTGGT20.4807692307692308No Hit
GGGCAAAGGGTGAAGAGAAGGAGGGCAAATGAACAAAATGAAAGGAGGCA20.4807692307692308No Hit
CAACCAAAAGAGAAGGAGGCACCCATCAAAGAGAGACAGCACCCTCTATG20.4807692307692308No Hit
TCCTATAGTGGCCGCAAAGAGGGGAGAGGCCCTGGGCTTCACCTACTCTT10.2403846153846154No Hit
GCATCAATCATCCCAGTGTTGCACAAGAGAAATAGAGAGATGTAACTATA10.2403846153846154No Hit
CAACCAAAAGAGAGGAGGCAACATCAAAGAGAGACAGCACCCTCTATGTA10.2403846153846154No Hit
CCCTATCAGTGGCCGCAAAGAGGGGAGAGGCCCTGGGCTTCACTTACTCT10.2403846153846154No Hit
GGGCAAATGGTGAAGAGAAAGAGGGCAAATGAACAAAATGAAAGGAGGCA10.2403846153846154No Hit
GCATCAATCATCGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTA10.2403846153846154Clontech SMARTer II A Oligonucleotide (100% over 24bp)
GCATCAATCATCACAGGGTTGGGTAGGAAGGAACTTGGAACAGAACAGAA10.2403846153846154No Hit
CAACAAAAGAGAAGGAGGCACCCCATCAAAGAGAGACAGCACCCTCTATG10.2403846153846154No Hit
GCATCAATCATCACAGAGTACATGGGAAGCAGTGGTATCACCGCAGAGTA10.2403846153846154Clontech SMARTer II A Oligonucleotide (95% over 24bp)
GCATCAATCATCACAGGGTACATGGAAGCAGTGGTATCAACGCAGCTGCT10.2403846153846154No Hit
CAACCAAAAGAGAAGGAGGCACCATCAAAGAGAGACAGCGCCATCAAAGA10.2403846153846154No Hit
CAACCAAAAGAGAAGGAGGCACGATTCCATCAAAGAGAGACAGCACCCTC10.2403846153846154No Hit
TCTATCAGTGGCCGCAAAGAGGGGAGAGGCCCTGGGCTTCACTTACTCTT10.2403846153846154No Hit
CAACCAAAAGAGAAGGAGGCACCGCCTGCCCAGTGACACATGTTTAACGG10.2403846153846154No Hit
TCCTAACAGTGGACGCAAAGAGGCGAGAGGCCCTAGGCATCACTTACTCT10.2403846153846154No Hit
TCCTATCAGTGGACGCACCGTTACTTGGAGCCTCTATGTAGAACCATGTC10.2403846153846154No Hit
TCATATCAGTGCCCTCAAAGAGGGGAGAGGCCCACGCATTAAATTACTCT10.2403846153846154No Hit
GCATAATCATCACGGGGTACATGGGAAGCAGTGGTATCAACGCAGAGTAC10.2403846153846154Clontech Universal Primer Mix Long (96% over 26bp)
CATCAAAGAGAGACAGCACCCTCTATGTAGAACCATGTCGTCAGTGTAGA10.2403846153846154No Hit
GCATCAATCATCACAGGGTTGGACTCGATAAATCGCGAGATGTCCCTCTT10.2403846153846154No Hit
CAACCAAAAGAGAAGGAGGCACAAGTTCAGCAAAGTGAGGACCACCGAAG10.2403846153846154No Hit
GCATCAATCATCACAGGGTACATGGGAAGCAGTGGTATCAACGCAGCTGC10.2403846153846154No Hit
GGCAAAGGGTGAAGAGAAAGAGGGCAAATGAACAAAATGAAAGGAGGCAA10.2403846153846154No Hit
TCCTATCAGTGGCCGCAAAGAGGGGAGAGGCCCTGGGCTCCACTTACTCT10.2403846153846154No Hit
TAATAACAGTACCCTAAAAGATTCAAGAGAACATGCACTTAACTAACTCT10.2403846153846154No Hit
GCATCAATCATCACAGAGTACATGGGAAGCAGTGGTATCAACGCAGCTGC10.2403846153846154Clontech Universal Primer Mix Long (95% over 23bp)
TCCTATCAGTGGCCGCAAAGAGGGGAGAGGCCCTGGGCTTCACCTACTCT10.2403846153846154No Hit
CAACCAAAAGAGAAGGAGGCACCCATCAAGGAGAGACAGCACCCATCAAA10.2403846153846154No Hit
GGGCAAAGGGGAAGAGAAAGAGGGCAAATGAACAAAATGAAAGGAGGCAA10.2403846153846154No Hit
CAACCAAAAGAGAAGGAGGCACCACCATCAAAGAGAGACAGCACCACCAT10.2403846153846154No Hit
GCATCAATCATCACAGGGTTGGACTCGAGAAATCGCGAGATATCCCTCTT10.2403846153846154No Hit
GCATCAATCATCACAGGGTTGGACTCGAGAAATCGCGAGAAGTCCCTCTT10.2403846153846154No Hit
CATCCAAAAGAGAAGGAGGCACCATCAAAGAGAGACAGCACCATCAAAGA10.2403846153846154No Hit
GCATCAATCTCACAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTAC10.2403846153846154Clontech Universal Primer Mix Long (96% over 26bp)
CAACCAAAAGAGAAGGAGGCACCCCATCAAAGAGAGACAGCACCCCATCT10.2403846153846154No Hit
GAATCAATCATCACATGGTTGGACTCGATAAATCTCTATATGTCCCTATT10.2403846153846154No Hit
CAACCAAAAGAGAAGGAGGCACAGCTTAAACAGAAAGTCATGAACCACGT10.2403846153846154No Hit
GCATCAACATCACAGGGTACATGGGAAGCAGTGGTATCAACGCAGAGTAC10.2403846153846154Clontech SMARTer II A Oligonucleotide (100% over 25bp)
TCCTATCAGTGGCCGCAAAGAGGGGAGAGGCCCTGGGCTTCGCTTACTCT10.2403846153846154No Hit
CAACCAAAAGAGAAGGAGGCACCCCCATCAAAGAGAGACAGCACCTCCAT10.2403846153846154No Hit
GCATCAATCATCACAGGGTTGGACTCGAGAAATCGCGAGATGTCCCTCAT10.2403846153846154No Hit
CAACCAAAGAGAGGAGGCACCATCAAAGAGAGACAGCACCCTCTATGTAG10.2403846153846154No Hit
TCCTATCAGTGGCCGCAAAGAGGGGAGAGGCTCTGGGCTTCACTTACTCT10.2403846153846154No Hit
CAACCAAAAGAGAAGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC10.2403846153846154Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CAACAAAGAGAGACAGCACCCCATCAAAGAGAGACAGCACTCCATCAAAG10.2403846153846154No Hit
CAACCAAAAGAGAAGGAGGCACTCCATCAAAGAGAGACAGCACCCTCTAT10.2403846153846154No Hit
CAACCAAAAGAGAGGAGGCACCATCAAAGAGAGACAGCACCCTCTATGTA10.2403846153846154No Hit
GGGCAAGGGTGAAGAGAAAGAGGGCAAATGAACAAAATGAAAGGAGGCAA10.2403846153846154No Hit
GCATCAATCATCACAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCAC10.2403846153846154No Hit
GGGTAAAGGGTGAAGAGAAAGAGGGCAAATGAACAAAATGAAAGGAGGCA10.2403846153846154No Hit
TCCTATCAGTGGCCGCAAGGAGGGGAGAGGCCCTGGGCTTCACTTACTCT10.2403846153846154No Hit
GGGCAAAGGGTGAAGAGAAAGAGGGCAAATGAAAAAAATGAAAGGAGGCA10.2403846153846154No Hit
CAACCAAAAGAGAAGGAGGCAGTGGTATCAACGCAGAGTACATGGGAAGA10.2403846153846154Clontech SMARTer II A Oligonucleotide (96% over 25bp)
TCCTATCAGTGGCCGCAAAGAGGGGAGGGGCCCTGGGCTTCACTTACTCT10.2403846153846154No Hit
CAACCAAAAGAGAAGGAGGACATCCCTGAGAACTTTTGCCCTCTATGTAG10.2403846153846154No Hit
CAACCAAAAGAGAAGGAGGCACCATCAAAGAGAGACAGCACCCCCATGTA10.2403846153846154No Hit
TCCTATCAGTGGCCGCAAAGAGGGGAGAGGCCCTGGGCTTCACTAACTCT10.2403846153846154No Hit
TCCTATAGTGGCCGCAAAGAGGGGAGAGGCCCTGGGCTTCACTTACTCTT10.2403846153846154No Hit
CAACCAAAAGAGAAGGAGGCACCGACATCCCTGAGAACTTTTGCCCTCTA10.2403846153846154No Hit
GGCAAAGGTGAAGAGAAAGAGGGCAAATGAACAAAATGAAAGGAGGCAAG10.2403846153846154No Hit
GCATCAATCATCACAGGGTTGGACTCGAGAAATCGCGAGATGTACCTCTA10.2403846153846154No Hit
TCCTATCAGTGGCCGCAAAGAGGCGAGAGGCCCTGCGCTTCACTTACTCT10.2403846153846154No Hit
GCATCAATCATCACAGGGTACATGGGAAGCAGTGGTATCAACGCAGAGAA10.2403846153846154Clontech SMARTer II A Oligonucleotide (95% over 24bp)
TCCTATCAGTGGCCGCAAAGAGAGACAGCACCGTTACTTGGAGCCTCTAT10.2403846153846154No Hit
GCAACAATCATCACAGGCTTGCACACGACAACAAGCGAGATCTCACTCTA10.2403846153846154No Hit
CAACCAAAGAGAAGGAGGCACCATCAAAGAGAGACAGCACCATCAAAGAG10.2403846153846154No Hit
GCATCAATCATCACAGGGTACATGGGAAAGCAGTGGTATCAACGCAGAGT10.2403846153846154Clontech Universal Primer Mix Long (100% over 23bp)
CAACCAAAAGGAAGGAGTGGTATCAACGCAGAGTACATGGGAGCAGTGGT10.2403846153846154Clontech SMARTer II A Oligonucleotide (96% over 25bp)
CAACCAAAAGAGAAGGAGGCACAGTGCCCGGCCTCTTTTTTCTAACAAGA10.2403846153846154No Hit

[FAIL]Adapter Content

Adapter graph