FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008148324

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008148324
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1235
Total Bases178.8 kbp
Sequences flagged as poor quality0
Sequence length143-145
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCAAGTAACGGTGCTGTCTGCTGGCTGGTGCAGGGCTCCTGGTGCTGA43034.81781376518219No Hit
GGTGTTTGGGATGGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCA37430.2834008097166No Hit
GCAAAAGTTCTCAGGGATGTCCTATTGCTAAGTGGGGTGGGGGGTGTTTG12410.040485829959515No Hit
GTGCTGTCTCTCTTTGATGGTGCTGTCTCTCTTTGATGGTGCTGTCTCTC312.5101214574898787No Hit
GTGCTGTCTCTCTTTGATGGAATCGCTACAGGGCTCCTGGTGCTGAAGGA191.5384615384615385No Hit
CTCCAAGTACGGTGCTGTCTGCTGGCTGGTGCAGGGCTCCTGGTGCTGAA110.8906882591093117No Hit
CTCCAAGTAACGGTGCTGTCACCCTTTGCCCGGCTAAAGACCAAGTCTCT110.8906882591093117No Hit
GTGCTGTCTCTCTTTGATGGTGCCTCCTTCTCTTTTGGTTGGGCTAAAGA100.8097165991902834No Hit
CTCCAAGTAACGGTGCTGCCACTGATAGGAGGCTAAAGACCAAGTCTCTG90.728744939271255No Hit
GCAAAAGTTCTCAGGGATGTCCTATTGCTAAGTGGGTGGTTCGCAGAAGC90.728744939271255No Hit
CTCCAAGTAACGGTGCGGCCACTGATAGGAGGCTAAAGACCAAGTCTCTG80.6477732793522267No Hit
GTGCTGTCTCTCTTTGATGGTGCTGTCTCTCTTTGATGGTGCCTCCTTCT70.5668016194331984No Hit
GCAAAAGTTCTCAGGGATGTCGGTGCCTCCTTCTCTTTTGGTTGGGCTAA60.4858299595141701No Hit
GTGCTGTCTCTCTTTTGGTTGGGCTAAAGACCAAGTCTCTGCTACCGTAG60.4858299595141701No Hit
GTGCTGTCTCTCTTTGATGGGCTAAAGACCAAGTCTCTGCTACCGTAGAA50.4048582995951417No Hit
CTCCAAGTAACGGTGCTGTCTCTCTTTGCGGCCACTGATAGGAGGCTAAA40.32388663967611336No Hit
CTCAAGTAACGGTGCTGTCTGCTGGCTGGTGCAGGGCTCCTGGTGCTGAA40.32388663967611336No Hit
GGTGTTTGGATGGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCAG40.32388663967611336No Hit
GTGTTTGGGATGGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCAG30.24291497975708504No Hit
GGTTTTGGGATGGAATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCAG30.24291497975708504No Hit
GGTGTTTGGGATGGATGGTGATCCACGCAGGTGGTTCGCAGAAGCAGCAG30.24291497975708504No Hit
CTCCAAGTAAGGTGCTGTCTGCTGGCTGGTGCAGGGCTCCTGGTGCTGAA30.24291497975708504No Hit
GTGCCTCCTTCTCTTTTGGTTGGGCTAAAGACCAAGTCTCTGCTACCGTA30.24291497975708504No Hit
CTCCAAGTAACGGTGCTGTCTGCTGGCTGGTGTAGGGCTCCTGGTGCTGA20.16194331983805668No Hit
CTCCAAGTAACGGTGTTGTCTGCTGGCTGGTGCAGGGCTCCTGGTGCTGA20.16194331983805668No Hit
GTGCTGTCTCTCTTTGATGATTGATGCGGCTAAAGACCAAGTCTCTGCTA20.16194331983805668No Hit
GCAAAGTTCTCAGGGATGTCCTATTGCTAAGTGGGGTGGGGGGTGTTTGG20.16194331983805668No Hit
GCAAAAGTCTCAGGGATGTCCTATTGCTAAGTGGGGTGGGGGGTGTTTGG20.16194331983805668No Hit
CTCCAAGTAACGGTGCTTTCTCTTCACCCTTTGCCCGGCTAAAGACCAAG20.16194331983805668No Hit
GTGCTGTCTCTCTTTGATGGTCATCCCCAAGCAGCTTAGGGACCCCATGT20.16194331983805668No Hit
GTGCTGTCTCTCTTTGATGGAGAGGGTAAAGGGCTCCTGGTGCTGAAGGA20.16194331983805668No Hit
GTGCTGTCTCTCTTTGATGGTGCTGTCTCTCTTTGATGGTGCTGTCTCGC20.16194331983805668No Hit
GCAAAAGTTTAGGGATGTCCTATTGCTAAGTGGGGTGGGGGGTGTTTGGG20.16194331983805668No Hit
CTCCAATAACGGTGCTGTCTGCTGGCTGGTGCAGGGCTCCTGGTGCTGAA20.16194331983805668No Hit
CTAAGTAACGGTGCTGTCTGCTGGCTGGTGCAGGGCTCCTGGTGCTGAAG20.16194331983805668No Hit
CTCCAAGTAACGGTGCTGTCTGCTGGTTGGTGCAGGGCTCCTGGTGCTGA20.16194331983805668No Hit
CTCCAGTAACGGTGCTGTCTGCTGGCTGGTGCAGGGCTCCTGGTGCTGAA20.16194331983805668No Hit
CTCCAAGTAACGGTGCTGTCTGCTGGCTGGTGCAGGGCTCCTGGAGCTGA20.16194331983805668No Hit
GTGCTGTCTCTCTTTGAGGGTGCCTCCTTCTCTTTTGGTTGGGCTAAAGA20.16194331983805668No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)