FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008151362

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008151362
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1356
Total Bases196.5 kbp
Sequences flagged as poor quality0
Sequence length144-145
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCACTAGAATGGACCTCTTCCTCATCACTAAATTATTTCAATTAAATAC32223.74631268436578No Hit
GGCACTAGAATGGACCTCTTCCTCATCACTACATTATTTCAATTAAATAC31523.23008849557522No Hit
AAATACCGTTCAGAGCTGCCACCAGGAGCTTGCAAATTGCTGCTGGAACC1359.955752212389381No Hit
AAATACCGTTCAGAGCTGCCACCAAGAGCTTGCAAATTGCTGCTGGAACC1309.587020648967552No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATG1067.817109144542774No Hit
AAATACCGTTCAGAACTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATG382.8023598820058995No Hit
AAATACCGTTCAGAGCTGCCAGCTTGGGGTACCTGGGAGGGCACAGCACT141.0324483775811208No Hit
AATACCGTTCAGAGCTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATGT80.5899705014749262No Hit
AAATACCGTTCAGCACTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATG80.5899705014749262No Hit
GGCCTAGAATGGACCTCTTCCTCATCACTACATTATTTCAATTAAATACA70.5162241887905604No Hit
GGCACTGAATGGACCTCTTCCTCATCACTAAATTATTTCAATTAAATACA70.5162241887905604No Hit
GGCATAGAATGGACCTCTTCCTCATCACTAAATTATTTCAATTAAATACA60.4424778761061947No Hit
GGCACTAGATGGACCTCTTCCTCATCACTAAATTATTTCAATTAAATACA60.4424778761061947No Hit
GGCACTAAATGGACCTCTTCCTCATCACTAAATTATTTCAATTAAATACA50.3687315634218289No Hit
GCACTAGAATGGACCTCTTCCTCATCACTACATTATTTCAATTAAATACA50.3687315634218289No Hit
GGCACTGAATGGACCTCTTCCTCATCACTACATTATTTCAATTAAATACA40.2949852507374631No Hit
GGCACTAGAATGGACTCTTCCTCATCACTACATTATTTCAATTAAATACA40.2949852507374631No Hit
GGACTAGAATGGACCTCTTCCTCATCACTACATTATTTCAATTAAATACA40.2949852507374631No Hit
AATACCGTTCAGAGCTGCCACCAGGAGCTTGCAAATTGCTGCTGGAACCT40.2949852507374631No Hit
GCACTAGAATGGACCTCTTCCTCATCACTAAATTATTTCAATTAAATACA40.2949852507374631No Hit
GGCACTAGAATGGACCTCTTTCTCATCACTACATTATTTCAATTAAATAC40.2949852507374631No Hit
GGCACTAGAATGGACCTCTTCGTTGATAGCACTGCCTTGTTTTTAAGTAA40.2949852507374631No Hit
AAATACGTTCAGAGCTGCCACCAGGAGCTTGCAAATTGCTGCTGGAACCT30.22123893805309736No Hit
GGCACAGAATGGACCTCTTCCTCATCACTACATTATTTCAATTAAATACA30.22123893805309736No Hit
GGCACTAGAATGGACTCTTCCTCATCACTAAATTATTTCAATTAAATACA30.22123893805309736No Hit
AAATACCGTTCAGAGCTGCCACCAGGAGCTTGCAAATTGCTGCTGGGACC30.22123893805309736No Hit
AATACCGTTCAGAGCTGCCACCAAGAGCTTGCAAATTGCTGCTGGAACCT30.22123893805309736No Hit
GGCATAGAATGGACCTCTTCCTCATCACTACATTATTTCAATTAAATACA30.22123893805309736No Hit
GGCACTAGAATGGACCTCTCCTCATCACTACATTATTTCAATTAAATACA30.22123893805309736No Hit
AAATACCGTTTCAGAGCTGCCACCAAGAGCTTGCAAATTGCTGCTGGAAC30.22123893805309736No Hit
GGCACTAGAATGGACCTCTTCCTCATCACTAAACTATTTCAATTAAATAC20.14749262536873156No Hit
GGCACTAGAATGGACCTCTGCGTTGATAGCACTGCCTTGTTTTTAAGTAA20.14749262536873156No Hit
GGCACTAGAATGGACCTCTCCCTCATCACTAAATTATTTCAATTAAATAC20.14749262536873156No Hit
GGCACTAGATGGACCTCTTCCTCATCACTACATTATTTCAATTAAATACA20.14749262536873156No Hit
AAATACCGTTCAGAGCTGCCCCCAAGAGCTTGCAAATTGCTGCTGGAACC20.14749262536873156No Hit
AAATACCGTTCAGACTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATGT20.14749262536873156No Hit
GGCACTAGAATGACCTCTTCCTCATCACTAAATTATTTCAATTAAATACA20.14749262536873156No Hit
GGCACTAGAATGACCTCTTCCTCATCACTACATTATTTCAATTAAATACA20.14749262536873156No Hit
GGCACTAGAATGGACCTCTTCCTCATCACTAAATTATTTCAATTAAATGC20.14749262536873156No Hit
GGCACTAGAATGGACCTCTTCCTCATCACTACATTATTCCAATTAAATAC20.14749262536873156No Hit
GGCACTAGAATGGACCTCTTCCTCATCACTACATTATCTCAATTAAATAC20.14749262536873156No Hit
GGCACTAGAATGGACCTCTTCCTCATCACTAAATTATATCAATTAAATAC20.14749262536873156No Hit
AAATACCGTTCAGAGCTGCCACTAGGAGCTTGCAAATTGCTGCTGGAACC20.14749262536873156No Hit
GGCACTAAATGGACCTCTTCCTCATCACTACATTATTTCAATTAAATACA20.14749262536873156No Hit
GGCACTAGAATGGACCTCTTCCTCATCACTACATTATTTAAATTAAATAC20.14749262536873156No Hit
GGCACTAGAATGGACCTCTTCCTCATCGCTACATTATTTCAATTAAATAC20.14749262536873156No Hit
GGACTAGAATGGACCTCTTCCTCATCACTAAATTATTTCAATTAAATACA20.14749262536873156No Hit
GGCACTAGAATGGACCTCTTCCTCAACACTAAATTATTTCAATTAAATAC20.14749262536873156No Hit
AGGCACTAGAATGGACCTCTTCCTCATCACTACATTATTTCAATTAAATA20.14749262536873156No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTAAGTAAGACGTGTAGAACCATGT20.14749262536873156No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)