FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008151432

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008151432
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences183
Total Bases26.5 kbp
Sequences flagged as poor quality0
Sequence length143-145
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCACTAGAATGGACCTCTTCCTCATCACTACATTATTTCAATTAAATAC5127.86885245901639No Hit
AAATACCGTTCAGAGCTGCCACCAAGAGCTTGCAAATTGCTGCTGGAACC4524.59016393442623No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATG2915.846994535519126No Hit
AAATACCGTTCAGAACTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATG137.103825136612022No Hit
GGCACTAGAATGGACCTCTTCCTCATCACTAAATTATTTCAATTAAATAC52.73224043715847No Hit
AAATACCGTTCAGAGCTGCCACCAGGAGCTTGCAAATTGCTGCTGGAACC42.185792349726776No Hit
AAATACCGTTCAGCACTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATG21.092896174863388No Hit
GGCACTAAATGGACCTCTTCCTCATCACTACATTATTTCAATTAAATACA21.092896174863388No Hit
AATACCGTTCAGAGCTGCCACCAAGAGCTTGCAAATTGCTGCTGGAACCT21.092896174863388No Hit
AAATACGTTCAGAGCTGCCACCAAGAGCTTGCAAATTGCTGCTGGAACCT21.092896174863388No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTAAGTAAGACGTGTAGAACCATGT21.092896174863388No Hit
GGCACTGAATGGACCTCTTCCTCATCACTACATTATTTCAATTAAATACA21.092896174863388No Hit
GGCACTAGATGGACCTCTTCCTCATCACTACATTATTTCAATTAAATACA10.546448087431694No Hit
AAATACCGTTCAGAGCTGCCAGCTTGGGGTACCTGGGAGGGCACAGCACT10.546448087431694No Hit
GTCACTAGAATTGAACTCTTCCTCATCACTACATTATTTCAATTAAATAC10.546448087431694No Hit
GGCACTAGAATGGACCTCTTCCTCATCACAACATTATTTCAATTAAATAC10.546448087431694No Hit
AAATACCGTTCAGAGCTGCCACCAAGAGCTTGCAAATTGCTGCTCGAACC10.546448087431694No Hit
AAATACCGTTCAGAGCTGCCAGCTTGGGGTACCTGGGAGGGCACAGAACT10.546448087431694No Hit
GGCCTAGAATGGACCTCTTCCTCATCACTACATTATTTCAATTAAATACA10.546448087431694No Hit
AAATACCGTTTCAGAGCTGCCACCAAGAGCTTGCTAATTGCTGCTGGAAC10.546448087431694No Hit
AAATACCGTTCAGAGCTGCCACCAGGAGCTTGCAAATTGCTTCTGGAACC10.546448087431694No Hit
AAATACCGTTCAGAGCTGCAACCAAGAGCTTGCAAATTGCAGCTGGAACC10.546448087431694No Hit
GGCACTAGAATGGTCCTCTTCCTCATCACTACATTATTTCAATTAAATAC10.546448087431694No Hit
AAATCCGTTCAGAGCTGCCACCAAGAGCTTGCAAATTGCTGCTGGAACCT10.546448087431694No Hit
GACTAGAATGGACCTCTTCCTCATCACTGCATTATTTCAATTAAATACAA10.546448087431694No Hit
AAATACCGTTCAGCGCGGGCGCCCAGGGCTTGCAAATTGGTGCTGGAACC10.546448087431694No Hit
AAATACCGTTCAGAGCTGCCAACAGGAGCTTGCAAATTGCTGCTGGAACC10.546448087431694No Hit
GGCACTAGAATGACCTCTTCCTCATCACTACATTATTTCAATTAAATACA10.546448087431694No Hit
AAATACCGTTAAGAGCTGCCACCAAGAGCTTGCAAAATGCTGCTCGAACC10.546448087431694No Hit
GGCACTAGAATGGACCCACAGAAACACCCACACAAAGACGTGTAGAACCA10.546448087431694No Hit
GGCATAGAATGGACCTCTTCCTCATCACTACATTATTTCAATTAAATACA10.546448087431694No Hit
AAATACCGTTCAGAGCTGCCAGCTTGGGGAACATGGGAGGGAACCGCACT10.546448087431694No Hit
AAATACCGTTCAGAGCGCCACCAAGAGCTTGCAAATTGCTGCTGGAACCT10.546448087431694No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGTAAGACGTGTATAACCATG10.546448087431694No Hit
AAATACCGTACAGAGCTGCCACCATGAGCTTGAAAATACCAGCTGGAACC10.546448087431694No Hit
AAATACCGTTCAGAGCTGCCACCAAGAGCTTGCAAATTGCTGCTGGACCC10.546448087431694No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)