FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008151602

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008151602
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences803
Total Bases116.4 kbp
Sequences flagged as poor quality0
Sequence length143-145
%GC60

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATG45356.413449564134496No Hit
AAATACCGTTCAGAACTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATG14117.559153175591533No Hit
AAATACCGTTCAGCACTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATG283.4869240348692405No Hit
GGCACTAGAATGGACCTCTTCGTTGATAGCACTGCCTTGTTTTTAAGTAA242.9887920298879203No Hit
AATACCGTTCAGAGCTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATGT131.61892901618929No Hit
GGCACTAGAATGGACCTCTTCGTTGATACCACTGCCTTGTTTTTAAGTAA101.2453300124533No Hit
AAATACGTTCAGAGCTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATGT101.2453300124533No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTAAGTAAGACGTGTAGAACCATGT70.8717310087173101No Hit
AAATACCGTTCAGAACTGCCTTGTTTTAAGTAAGACGTGTAGAACCATGT60.7471980074719801No Hit
GGCACTAGAATGGACCTCTGCGTTGATACCACTGCTTCCATGTACTCTGC50.62266500622665Clontech Universal Primer Mix Long (95% over 23bp)
GGCACTAGAATGGACCTCTTCGTTGATACCACTGCTTCCATGTACTCTGC50.62266500622665Clontech SMARTer II A Oligonucleotide (95% over 22bp)
AAATACCGTTCAGACTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATGT50.62266500622665No Hit
AAATACCGTTAGAGCTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATGT40.49813200498132004No Hit
GGCACTAGAATGGACCTCTTCGTTGATACCACTGCTCCCATGTACTCTGC40.49813200498132004Clontech SMARTer II A Oligonucleotide (95% over 21bp)
AAATACCGTTCAGAGCTGCCACAGAAACACACACACAAAGACGTGTAGAA20.24906600249066002No Hit
AAATACCGTCAGCACTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATGT20.24906600249066002No Hit
AAATACCTTCAGAGCTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATGT20.24906600249066002No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAATAAGACGTGTAGAACCATGT20.24906600249066002No Hit
AAATACCGTTCAGCACTGCCTTGTTTTAAGTAAGACGTGTAGAACCATGT20.24906600249066002No Hit
AATACCGTTCAGAACTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATGT20.24906600249066002No Hit
GGCACTAGAATGGACCTCTTCGTTGATACCACTGCTTTGTTTTTAAGTAA20.24906600249066002Clontech SMARTer II A Oligonucleotide (95% over 22bp)
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGTAAGACGTGTAGAACAATG20.24906600249066002No Hit
AAATACCGTTAAGAGATGCCTTGTTTTTAAGTAAGACGTGTAGAACCATG10.12453300124533001No Hit
AAATACCGTTCAGCGCTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATG10.12453300124533001No Hit
GGACTAGAATGGACCTCTTCGTTGATAGCACTGCCTTGTTTTTAAGTAAG10.12453300124533001No Hit
AAATACCGTTCAGAACTGCCTTGTTTAAGTAAGACGTGTAGAACCATGTC10.12453300124533001No Hit
AAATACCGTTCAGAGCTGCCTTATTTTTAAGTAAGACGTGTAGAACCATG10.12453300124533001No Hit
GGCACTAGAATGGACCTCTTCGTTGATAGCACTGCCTTTTTTAAGTAAGA10.12453300124533001No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGTAAGACGTGTAGCACCATG10.12453300124533001No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAGTAAGACGTGTAGAACCATGT10.12453300124533001No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGTAAGACGTGTAGAACCAAG10.12453300124533001No Hit
AATACCGTTCAGAGCTGCCACAGAAACACACACACAAAGACGTGTAGAAC10.12453300124533001No Hit
AAAAACCGTTCAGCACAGCCATTTTTTTAATTAAGAAGTGTAGAAACATG10.12453300124533001No Hit
AAATACCGTTCAGAACTGCCTTGTTTTTAAGTAAGACGTGTAGGAACCAT10.12453300124533001No Hit
AAATACCGTTCAGAACTGCCTTGTTTTTAAGCAAGACGTGTAGAACCATG10.12453300124533001No Hit
GGCACTAGAATGGACCTCTGCGTTGATACCACTGCTTTGTTTTTAAGTAA10.12453300124533001Clontech Universal Primer Mix Long (95% over 23bp)
AAATACCGTTCAGAGCTGCCTGTTTTTAAGTAAGACGTGTAGAACCATGT10.12453300124533001No Hit
AAATACCGTTTAGCACTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATG10.12453300124533001No Hit
GGCACTAGAATGGACCTCTGCGTTGATAGCACTGCCTTGTTTTTAAGTAA10.12453300124533001No Hit
AAATACAGTTCAGAGCTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATG10.12453300124533001No Hit
AAATCCGTTCAGAACTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATGT10.12453300124533001No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGTAAGACGTCTAGAACCATG10.12453300124533001No Hit
AAATACCGTTCAGAGCACTGCCTTGTTTTTAAGTAAGACGTGTAGAACCA10.12453300124533001No Hit
GGCACTAGAATGGACCTCTGCGTTGAAGCACTGCCTTGTTTTTAAGTAAG10.12453300124533001No Hit
AAACACCGTTCAGAGCTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATG10.12453300124533001No Hit
GGCACTAGAATGGCCTCTTCGTTGATAGCACTGCCTTGTTTTTAAGTAAG10.12453300124533001No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGTAAGACGTGCAGAACCATG10.12453300124533001No Hit
AAATACCGTCAGAGCTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATGT10.12453300124533001No Hit
GCACTAGAATGGACCTCTTCGTTGATAGCACTGCCTTGTTTTTAAGTAAG10.12453300124533001No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGTAAGACGTATAGAACCATG10.12453300124533001No Hit
AAATACCGGTCAGAGCTGCCTTGTTTTTAAGTAAGACGGGTAGACCCATG10.12453300124533001No Hit
GGCACTGAATGGACCTCTTCGTTGATAGCACTGCCTTGTTTTTAAGTAAG10.12453300124533001No Hit
GGCACTAGAATGGACCTCTTCGTTGATAGCACTGCCTTGTCTTTAAGTAA10.12453300124533001No Hit
AAATCGTTCAGAGCTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATGTC10.12453300124533001No Hit
AATACCGTTCGAGCTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATGTC10.12453300124533001No Hit
GGCACTAGAATGGACCTCTTCGTTGATACCACTGCTCCCCATGTACTCTG10.12453300124533001Clontech SMARTer II A Oligonucleotide (95% over 21bp)
AAATACCGTTTAGAACTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATG10.12453300124533001No Hit
GGCACTAGAATGGACCTCTGCGTTGATACCACTGCTTACCCACAGAAACA10.12453300124533001Clontech Universal Primer Mix Long (95% over 23bp)
AAATACCGTTCAGAGCTGCCTTGTCTTTAAGTAAGACGTGTAGAACCATG10.12453300124533001No Hit
GGCACTAGAATGGACCTCTTCGTTGATAGCACTGCCTTGTTTTTAATAAG10.12453300124533001No Hit
GGCACTAGAATGGACCTCTTCGTTGATAGCACTGCCTTGTTTTAAGTAAG10.12453300124533001No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGTAAGACGTGTATAACAATG10.12453300124533001No Hit
AAATACCGTTCAGAGCTGCCTTTTTTTAAGTAAGACGTGTAGAACCATGT10.12453300124533001No Hit
GGCACTAAATGGACCTCTTCGTTGATACCACTGCTTTGTTTTTAAGTAAG10.12453300124533001Clontech SMARTer II A Oligonucleotide (95% over 22bp)
AAATACCGTTCAGAGCTGTCTTGTTTTTAAGTAAGACGTGTAGAACCATG10.12453300124533001No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGAAAGACGTGTAGAACCATG10.12453300124533001No Hit
AAATACCGTTCAGAGCTGCCTACGGTAGCACTGCCTTGTTTTTAAGTAAG10.12453300124533001No Hit
GGCACTAGAATGGACCCTTCGTTGATAGCACTGCCTTGTTTTTAAGTAAG10.12453300124533001No Hit
AAATACCGTTCAGCACTGCCTTGTTTTTAAGTAAGACGTGTAGAACGATG10.12453300124533001No Hit
AAATACCGTTCAGAACTGCCTTATTTTTAAGTAAGACGTGTAGAACCATG10.12453300124533001No Hit
AAATAGTTCAGAACTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATGTC10.12453300124533001No Hit
AAATACCGTTCAGAACTGCCTTGTTTTTAAGAAGACGTGTAGAACCATGT10.12453300124533001No Hit
AAATACCGTTCATAGCTGCCTTGTTTTAAGTAAGACGTGTAGAACCATGT10.12453300124533001No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGGTAAGACGTGTAGAACCAT10.12453300124533001No Hit
GGCATAGAATGGACCTCTTCGTTGATAGCACTGCCTTGTTTTAAGTAAGA10.12453300124533001No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGCAAGACGTGTAGAACCATG10.12453300124533001No Hit
CCGTTCAGAGCTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATGTCGTC10.12453300124533001No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGTAAGACGTGTAGACCCATG10.12453300124533001No Hit
AAATACCGTTCAGAGCTGCCACAGAAGCACACACACAAAGACGTGTAGAA10.12453300124533001No Hit
AAATACCGTTCAGAGCTGCATTGTTTTTAAGTAAGACGTGTAGAACCATG10.12453300124533001No Hit
AAATACCGTTCAGCGCTGCCTTGTTTTTAAGTAAGACGTGTAGAAACATG10.12453300124533001No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTACGTAAGACGTGTAGAACCATG10.12453300124533001No Hit
AAATACCGTTCAGAGCTGCCTTGCTTTTAAGTAAGACGTGTAGAACCATG10.12453300124533001No Hit
AAACACCGTTCAGAACTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATG10.12453300124533001No Hit
AAATACCGTTCAGAACTGCCTTGTTTTTAAGTAAGACCTGTAGAACCATG10.12453300124533001No Hit
AAATACGTTCAGAACTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATGT10.12453300124533001No Hit
AAATACCGTTCGGAACTGCCTTGTTTTTAAGTAAGACGTGTAGAACCATG10.12453300124533001No Hit
AAATACCGTTTCAGAGCTGCCTTGTTTTTAAGTAAGACGTGTAGAACCAT10.12453300124533001No Hit
GGCACTAGAATGGACCTCTTCGTTGATACCACTGCTTCCCATGTACTCTG10.12453300124533001Clontech SMARTer II A Oligonucleotide (95% over 22bp)
AAATACCGTTCAGAACTGCCTTGTTTTAAAGTAAGACGTGTAGAACCATG10.12453300124533001No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGTAAGACGTGTAGATCCATG10.12453300124533001No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGTAAGACGTGAAGAACCATG10.12453300124533001No Hit
GACTAGAATGGACCTCTTCGTTGATACCACTGCTTACCCACAGAAACACA10.12453300124533001Clontech SMARTer II A Oligonucleotide (95% over 22bp)
AAATACCGTTCAGAGCCCACAGAAACACACACACAAAGACGTGTAGAACC10.12453300124533001No Hit

[FAIL]Adapter Content

Adapter graph