FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008151740

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008151740
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12087
Total Bases1.7 Mbp
Sequences flagged as poor quality0
Sequence length142-145
%GC32

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCACTAGAATGGACCTCTTCCTCATCACTACATTATTTCAATTAAATAC561846.479688921982294No Hit
GGCACTAGAATGGACCTCTTCCTCATCACTAAATTATTTCAATTAAATAC293124.24919334822537No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGTTTACGCTGTAGAACCATG2532.0931579382807977No Hit
GGCACTAGATGGACCTCTTCCTCATCACTACATTATTTCAATTAAATACA2041.6877637130801686No Hit
GCACTAGAATGGACCTCTTCCTCATCACTACATTATTTCAATTAAATACA1431.1830892694630595No Hit
GGCACTAGATGGACCTCTTCCTCATCACTAAATTATTTCAATTAAATACA1010.8356085050053776No Hit
AAATACCGTTCAGAACTGCCTTGTTTTTAAGTTTACGCTGTAGAACCATG940.7776950442624307No Hit
GGCACTAAATGGACCTCTTCCTCATCACTACATTATTTCAATTAAATACA790.6535947712418301No Hit
GCACTAGAATGGACCTCTTCCTCATCACTAAATTATTTCAATTAAATACA780.6453214197071234No Hit
GGCACTAGAATGACCTCTTCCTCATCACTACATTATTTCAATTAAATACA740.6122280135682965No Hit
GGACTAGAATGGACCTCTTCCTCATCACTACATTATTTCAATTAAATACA720.5956813104988831No Hit
GGCACTAGAAGGACCTCTTCCTCATCACTACATTATTTCAATTAAATACA620.512947795151816No Hit
GGCACTGAATGGACCTCTTCCTCATCACTACATTATTTCAATTAAATACA620.512947795151816No Hit
GGCATAGAATGGACCTCTTCCTCATCACTACATTATTTCAATTAAATACA550.455034334408869No Hit
AAATACCGTTCAGAGCTGCCACCAAGAGCTTGCAAATTGCTGCTGGAACC520.4302142798047489No Hit
GGCACTAGAATGGACTCTTCCTCATCACTACATTATTTCAATTAAATACA510.42194092827004215No Hit
GGCACAGAATGGACCTCTTCCTCATCACTACATTATTTCAATTAAATACA460.38057417059650867No Hit
GGACTAGAATGGACCTCTTCCTCATCACTAAATTATTTCAATTAAATACA450.37230081906180196No Hit
GGCACTAGAATGACCTCTTCCTCATCACTAAATTATTTCAATTAAATACA430.35575411599238854No Hit
GGCACTAAATGGACCTCTTCCTCATCACTAAATTATTTCAATTAAATACA410.3392074129229751No Hit
AAATACCGTTCAGCACTGCCTTGTTTTTAAGTTTACGCTGTAGAACCATG410.3392074129229751No Hit
GGCCTAGAATGGACCTCTTCCTCATCACTACATTATTTCAATTAAATACA370.30611400678414824No Hit
GGCACTGAATGGACCTCTTCCTCATCACTAAATTATTTCAATTAAATACA330.2730206006453214No Hit
GGCATAGAATGGACCTCTTCCTCATCACTAAATTATTTCAATTAAATACA290.23992719450649458No Hit
GGCACTAGAATGGACCTCTTCGTTGATAGCACTGCCTTGTTTTTAAGTTT260.21510713990237446No Hit
GGCACTAGAATGGACCTCTCCCTCATCACTACATTATTTCAATTAAATAC250.20683378836766775No Hit
GGCCTAGAATGGACCTCTTCCTCATCACTAAATTATTTCAATTAAATACA240.19856043683296104No Hit
GGCACAGAATGGACCTCTTCCTCATCACTAAATTATTTCAATTAAATACA240.19856043683296104No Hit
GGCACTAGAATGGACCCTTCCTCATCACTACATTATTTCAATTAAATACA210.1737403822288409No Hit
GGCACTAGAAGGACCTCTTCCTCATCACTAAATTATTTCAATTAAATACA210.1737403822288409No Hit
GGCACTAGAATGGACCTCTTCGTCATCACTACATTATTTCAATTAAATAC190.15719367915942747No Hit
GGCACTAGAATGGCCCTCTTCCTCATCACTACATTATTTCAATTAAATAC190.15719367915942747No Hit
GGCACTAGAATGGACCCCTTCCTCATCACTACATTATTTCAATTAAATAC180.14892032762472077No Hit
GGCACTAGAATGGCCTCTTCCTCATCACTACATTATTTCAATTAAATACA170.14064697609001406No Hit
GGCACTAGAATGGACCTCGTCCTCATCACTACATTATTTCAATTAAATAC150.12410027302060064No Hit
GGCACTAGAATGGACCTCTTCCCCATCACTACATTATTTCAATTAAATAC150.12410027302060064No Hit
GGCACTAGAATGGACTCTTCCTCATCACTAAATTATTTCAATTAAATACA150.12410027302060064No Hit
AAATACCGTTCAGAGCTGCCACAGAAACACACACACATTACGCTGTAGAA150.12410027302060064No Hit
GGCACTAGAATGGACCCTTCCTCATCACTAAATTATTTCAATTAAATACA150.12410027302060064No Hit
GGCACTAGAATGGACCTCTTCCTCATCACTACATTATTTAAATTAAATAC150.12410027302060064No Hit
GGCACTAGAATGGACCTCTTCCTCATCACTACGTTATTTCAATTAAATAC130.10755356995118723No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)