FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008152466

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008152466
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1604
Total Bases232.5 kbp
Sequences flagged as poor quality0
Sequence length141-145
%GC50

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATG46929.239401496259354No Hit
GGCACTAGAATGGACCTCTTCCTCATCACTACATTATTTCAATTAAATAC19312.032418952618453No Hit
AAATACCGTTCAGAACTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATG18011.221945137157107No Hit
AAATACCGTTCAGAGCTGCCACCAAGAGCTTGCAAATTGCTGCTGGAACC16710.41147132169576No Hit
AAATACCGTTCAGAGCTGCCACCAGGAGCTTGCAAATTGCTGCTGGAACC16410.224438902743142No Hit
GGCACTAGAATGGACCTCTTCCTCATCACTAAATTATTTCAATTAAATAC543.366583541147132No Hit
AAATACCGTTCAGCACTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATG422.6184538653366585No Hit
AAATACCGTTCAGAGCTGCCAGCTTGGGGTACCTGGGAGGGCACAGCACT110.6857855361596009No Hit
AATACCGTTCAGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGT110.6857855361596009No Hit
AATACCGTTCAGAACTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGT70.4364089775561097No Hit
GGCACTAGAATGACCTCTTCCTCATCACTACATTATTTCAATTAAATACA60.3740648379052369No Hit
GGCACTAGATGGACCTCTTCCTCATCACTACATTATTTCAATTAAATACA50.3117206982543641No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTAAGTGGCTAATGTAGAACCATGT50.3117206982543641No Hit
AATACCGTTCAGAGCTGCCACCAAGAGCTTGCAAATTGCTGCTGGAACCT40.24937655860349126No Hit
AAATACCGTTCAGACTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGT40.24937655860349126No Hit
AAATACGTTCAGAGCTGCCACCAGGAGCTTGCAAATTGCTGCTGGAACCT30.18703241895261846No Hit
GGCACTAGAATGGACCTCTTCGTTGATAGCACTGCCTTGTTTTTAAGTGG30.18703241895261846No Hit
GCACTAGAATGGACCTCTTCCTCATCACTACATTATTTCAATTAAATACA30.18703241895261846No Hit
AAATACGTTCAGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGT30.18703241895261846No Hit
AAATACCGTTCAGAGCTGCCACCAAGAGCTTGCAAATTGCTGCTGGGACC30.18703241895261846No Hit
GGCACTAAATGGACCTCTTCCTCATCACTACATTATTTCAATTAAATACA30.18703241895261846No Hit
AAATACCGTTAGAGCTGCCACCAAGAGCTTGCAAATTGCTGCTGGAACCT30.18703241895261846No Hit
AAATACCGTTCAAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGT30.18703241895261846No Hit
AAATACCGTTCAGAACTGCCTTGTTTTAAGTGGCTAATGTAGAACCATGT30.18703241895261846No Hit
AAATACCGTCAGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGT20.12468827930174563No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAATGGCTAATGTAGAACCATGT20.12468827930174563No Hit
AAATACCGTTCGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGT20.12468827930174563No Hit
AAATACCGTTCAGAGCTGCCACCAAGAGCTTGCAAATTGCTGCTGGAACA20.12468827930174563No Hit
GGCACTAGAATGGACTCTTCCTCATCACTACATTATTTCAATTAAATACA20.12468827930174563No Hit
AAATACCGTTCAGAGCTGCCACCAAGAGCTTGCAAATTGTTGCTGGAACC20.12468827930174563No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTAAAGTGGCTAATGTAGAACCATG20.12468827930174563No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGACCCATG20.12468827930174563No Hit
AATACCGTTCAGAGCTGCCACCAGGAGCTTGCAAATTGCTGCTGGAACCT20.12468827930174563No Hit
AAATACCGTTCAGAGTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGT20.12468827930174563No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGCACCATG20.12468827930174563No Hit
GGCACTAGAATGGACCTCTTCCTCATCACTACGTTATTTCAATTAAATAC20.12468827930174563No Hit
AAATACTTCAGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGTC20.12468827930174563No Hit
AAATACCGTTCAGAGCTGCCAAGCTGCAAGGGGCCATGCGCCAAGCAAGT20.12468827930174563No Hit
AAATACCGTTCAGAGCTGCCATGTTTTTAAGTGGCTAATGTAGAACCATG20.12468827930174563No Hit
GGCATAGAATGGACCTCTTCCTCATCACTACATTATTTCAATTAAATACA20.12468827930174563No Hit
AAATACCGTTCAGGGCTCCACCAGGAGCTTGCAAATTGCTGCTGGAACCT20.12468827930174563No Hit
AAAACCGTTCAGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGT20.12468827930174563No Hit
AAATACCGTTCAGAGCTGCCACCAGGAGCTCGCAAATTGCTGCTGGAACC20.12468827930174563No Hit
AAATACCGTTCAGAGCGCCACCAAGAGCTTGCAAATTGCTGCTGGAACCT20.12468827930174563No Hit
GGCACTAGAATGTACCTCTTCCTCATCACTACATTATTTCAATTAAATAC20.12468827930174563No Hit
AATACCGTCAGAGCTGCCACCAGGAGCTTGCAAATTGCTGCTGGAACCTG20.12468827930174563No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)