FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008152754

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008152754
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences962
Total Bases139.4 kbp
Sequences flagged as poor quality0
Sequence length140-145
%GC60

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATG57759.97920997920998No Hit
AAATACCGTTCAGAACTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATG16116.735966735966738No Hit
AAATACCGTTCAGCACTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATG242.494802494802495No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTAAGTGGCTAATGTAGAACCATGT141.4553014553014554No Hit
AATACCGTTCAGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGT141.4553014553014554No Hit
GGCACTAGAATGGACCTCTTCGTTGATACCACTGCTTCCATGTACTCTGC60.6237006237006237Clontech SMARTer II A Oligonucleotide (95% over 22bp)
AAATACCGTTCAGAGCTGCCTTGTTTTTAATGGCTAATGTAGAACCATGT50.5197505197505198No Hit
GGCACTAGAATGGACCTCTTCGTTGATAGCACTGCCTTGTTTTTAAGTGG50.5197505197505198No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAGTGGCTAATGTAGAACCATGT50.5197505197505198No Hit
AAATACGTTCAGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGT50.5197505197505198No Hit
AAATACCGTTCAGAACTGCCTTGTTTTAAGTGGCTAATGTAGAACCATGT40.4158004158004158No Hit
AAATACCTTCAGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGT40.4158004158004158No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGCACCATG40.4158004158004158No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGGGCTAATGTAGAACCATGT40.4158004158004158No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGTGTCTAATGTAGAACCATG30.31185031185031187No Hit
AAATACCGTCAGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGT30.31185031185031187No Hit
GGCACTAGAATGGACCTCTTCGTTGATACCACTGCCTTGTTTTTAAGTGG30.31185031185031187No Hit
AAATCCGTTCAGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGT30.31185031185031187No Hit
AAAACCGTTCAGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGT30.31185031185031187No Hit
AAATACCGTTAGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGT30.31185031185031187No Hit
AAATACCTTCAGAACTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGT30.31185031185031187No Hit
AATACCGTTCAGAACTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGT30.31185031185031187No Hit
AAATACCGTTCGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGT20.2079002079002079No Hit
AAATACCGTTCAGACTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGT20.2079002079002079No Hit
AAATACCGTTCAGAGCTGCCTTATTTTTAAGTGGCTAATGTAGAACCATG20.2079002079002079No Hit
AAATACCGTTCAGAGCTGCCTTTTTTTAAGTGGCTAATGTAGAACCATGT20.2079002079002079No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGACCCATG20.2079002079002079No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGGGGCTAATGTAGAACCATG20.2079002079002079No Hit
GGCACTAGAATGGACCTCTGCGTTGATACCACTGCTTACCCACAGAAACA20.2079002079002079Clontech Universal Primer Mix Long (95% over 23bp)
GGCACTAGAATGGACCTCTGCGTTGATACCACTGCCTTGTTTTTAAGTGG20.2079002079002079Clontech SMARTer II A Oligonucleotide (95% over 22bp)
AAATACCGTTCAGAGTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGT20.2079002079002079No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAATCATG20.2079002079002079No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACAATG20.2079002079002079No Hit
GGCACTAGAATGGACCTCTTCGTTGATACCACTGCTCCCATGTACTCTGC20.2079002079002079Clontech SMARTer II A Oligonucleotide (95% over 21bp)
AAATACGTTCAGACTGCCTTGTTTTTAAGAGGCTAATGTAGAACCATGTC10.10395010395010396No Hit
GGCACTAGAATGGACCTCTTCGTTGATACCACTGCTCCATGTACTCTGCG10.10395010395010396Clontech SMARTer II A Oligonucleotide (95% over 21bp)
GGCACTAGAATGGACCTCTTCGTTGATAGCACTGCCTTGTTTTTAGTGGC10.10395010395010396No Hit
AAATACCGTTCAGAGCTGCCTGTTTTTAAGTGGCTAATGTAGAACCATGT10.10395010395010396No Hit
AAATACCCTTCGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGT10.10395010395010396No Hit
AATAACGTTCAGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGT10.10395010395010396No Hit
AAATACCGTTCAGAACTGCCATGTATTTAAGAGGCTAATGTAGACCAATG10.10395010395010396No Hit
AAATACCGTTCAGAGTTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATG10.10395010395010396No Hit
AAATACCGTTCAGACTGCCTTGTTTTTAAGTGGCTAATTTAGAACCATGT10.10395010395010396No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGTGGCTAAATTAGAACCATG10.10395010395010396No Hit
AAATACCGTTCAGCACTGACTTGTTTTTAAGTGGCTAATGTAGAACCATG10.10395010395010396No Hit
AAATACCGTTCGAACTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGT10.10395010395010396No Hit
AAATACCGTTCAGAGCTGTCTTGTTTTTAAGTGGCTAATGTAGAACCATG10.10395010395010396No Hit
AAATACCGTTCAGAGCTGCCTAGTTTTTAAGTGGCTAATGTAGAACCATG10.10395010395010396No Hit
AAATACCGTTCAGAGCTGCCACAGAAACACACACACAGGCTAATGTAGAA10.10395010395010396No Hit
AAATACCGTTCGAGCTGCCTTGTTTTAAGTGGCTAATGTAGAACCATGTC10.10395010395010396No Hit
AAATACCGTTCAGAGCTGCCACACCCACAGAAACACACACACAGGCTAAT10.10395010395010396No Hit
AAATCCTTCAGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGTC10.10395010395010396No Hit
AAATACCGTTCAGAACTGCCTTGTTTTTAAGTGGCTAATGTAGAACCCAT10.10395010395010396No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGTGGCTAATGTGGAACCATG10.10395010395010396No Hit
AAATACGTTCAGAACTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGT10.10395010395010396No Hit
AAATACCGTTCAGAACTGCCTTGTTTTTAAGTGGCTAATGTAGAACTATG10.10395010395010396No Hit
AAAAACCGTTCAGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATG10.10395010395010396No Hit
AAATACTGTTCAGCACTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATG10.10395010395010396No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGGCTAATGTAGAACCATGTC10.10395010395010396No Hit
AAATACCGTTCAGAACTGCCTTGTTTTTAAGTGGCTAATGTAGAACCAGT10.10395010395010396No Hit
AAATACCGTTCAGAGATGCCTTGTTTTTAAGTGGCTAATGTAGAACCATG10.10395010395010396No Hit
GGCACTAGAATGGACCTCTGCGTTGATACCACTGATTCCATGTACTCTGC10.10395010395010396Clontech SMARTer II A Oligonucleotide (95% over 22bp)
AAATACCGTTCAGAGCTGCCTTGATTTTAAGTGGCTAATGTAGAACCATG10.10395010395010396No Hit
ATATAGAGGTCAGAGGTGATTTTTTTTAATGTGTATTGTATAGAACAATC10.10395010395010396No Hit
GGCACTAGAATGGACCTCTTCGTTGATACCACTGCTTCACATGTACTCTG10.10395010395010396Clontech SMARTer II A Oligonucleotide (95% over 22bp)
AAATACCGTTCAGAACTGCCTTGTTTAAGTGGCTAATGTAGAACCATGTC10.10395010395010396No Hit
GGCACTAGAATGGACCTCTTCGTTGATACCACTGCTTACCCACAGAAACA10.10395010395010396Clontech SMARTer II A Oligonucleotide (95% over 22bp)
GGCACTAGAATGGACCTCTGCGTTGATAGCACTGCCTTGTTTTTAAGTGG10.10395010395010396No Hit
AAATACCGTTCAGAGCTGCTTGTTTTTAAGTGGCTAATGTAGAACCATGT10.10395010395010396No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGTTGCTAATGTAGAACCATG10.10395010395010396No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGTGGGCTAATGTAGAACCAT10.10395010395010396No Hit
GGCACTAGAATGGACCTCTTCGTTGATACCACTGCCTTGTTTTAAGTGGC10.10395010395010396No Hit
AAATACCGTTCAGAGCTACCTTGTTTTTAAGTGGCTAATGTAGAACCATG10.10395010395010396No Hit
AAATACCGTTCAGAACTGCCTAGTTTTTAAGTGGCTAATGTAGAACCATG10.10395010395010396No Hit
AAATACAGTTCACATCTGAATATTTTATAATTGGCTAATTAAGAAACAAT10.10395010395010396No Hit
GGCACTAGAATGGACCTCTTCGTTGATACCACTGCTTCCCATGTACTCTG10.10395010395010396Clontech SMARTer II A Oligonucleotide (95% over 22bp)
AAATACCGTTCAGCACTGCCTGTTTTTAAGTGGCTAATGTAGAACCATGT10.10395010395010396No Hit
AAATACCGTTCAGAGCCGCCTTGTTTTTAAGTGGCTAATGTAGAACCATG10.10395010395010396No Hit
AAATACCGTTCAAGCTGCCTTGTTTTTAATGGCTAATGTAGAACCATGTC10.10395010395010396No Hit
AAATACCGTTCAGAACTGCCTTGTTTTTAAGTGGCTAATGTAGAACCAAG10.10395010395010396No Hit
GGCACTAGAATGGACCTCTTCGTTGATAGAACTGCCTTGTTTTTAAGTGG10.10395010395010396No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGAGGCTAATGTAGAACCAAG10.10395010395010396No Hit
AAATACCGTTCAGAGCTGCCATGTTTTTAACTGGCTAATGAAGAAACAAG10.10395010395010396No Hit
GGCACTAGAATGGCCTCTTCGTTGATAGCACTGCCTTGTTTTTAAGTGGC10.10395010395010396No Hit
AAATACAGTTAAGAACTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATG10.10395010395010396No Hit
GGCACTAGAATGGACCTCTTCGTTGATACCACTGCTGCACTGCCTTGTTT10.10395010395010396Clontech SMARTer II A Oligonucleotide (95% over 21bp)
AAATACCGTTCGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACCAAGT10.10395010395010396No Hit
AAATACCGTCAGAGCTGCCTGTTTTTAAGTGGCTAATGTAGAACCATGTC10.10395010395010396No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATT10.10395010395010396No Hit
AAATACCGTTCAGAACTGCCTTGTTTTTAAGTGGCTAATGTAGAACCTGT10.10395010395010396No Hit
AAATACCATTCAGAACTGCCTTGTTTTAAGTGGCTAATGTAGAACCATGT10.10395010395010396No Hit
AAATACCGTTCAAAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATG10.10395010395010396No Hit
AAATACCGTTCAGCGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATG10.10395010395010396No Hit
AAATACCGTTCAGAGCGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGT10.10395010395010396No Hit
AAATACGTTCAGCACTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGT10.10395010395010396No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAAGTGGCTAATGAAGAACCATG10.10395010395010396No Hit
AAATACCATTCAGAACTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATG10.10395010395010396No Hit
GGCACTAGAATGGACCTCTTCGTTGTTAGCACTGCCTTGTTTTTAAGTGG10.10395010395010396No Hit
AATACGTTCAAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGTCG10.10395010395010396No Hit
AAATACCGTTCAGAATTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATG10.10395010395010396No Hit
AGATACCGTTCAGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATG10.10395010395010396No Hit
AAAAACCGTTCAGAGCTGCCTTGTTTTTAAGTGGATAATGTAGAACCATG10.10395010395010396No Hit
AAATACCGTTCAGAGCTGCCTTGTTTTTAATTGGCGAATGTATAACCATG10.10395010395010396No Hit
AAACCGTTCAAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGTCG10.10395010395010396No Hit
AAATACCGTTCAGAGCTGCCATGTTTTTAAATGGCTAATGTAGAACCATG10.10395010395010396No Hit
AAATACCGTTAAGAACTGCATTGTTTTTAAGTGGCTAATGTAGAACAATG10.10395010395010396No Hit
AAATACCGTTCAGAACTGCCTTGTTTTTAAGAGGCTAATGTAGAACCATG10.10395010395010396No Hit
AAATACTGTTCAGAACTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATG10.10395010395010396No Hit
AAATACCGTCCAGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATG10.10395010395010396No Hit
AAATACAGTTCAGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATG10.10395010395010396No Hit
AAATACCGTCAGAACTGCCTTGTTTTTAAGTGGCTAATGTAGAACCATGT10.10395010395010396No Hit
AAATACCGTTCAGAACTGCCTTGTTTTTAAGTGGCTAATGTAGACCCAGG10.10395010395010396No Hit
AAATACGTTCAGAACTGCCTTGTTTTTAGTGGCTAATGTAGAACCATGTC10.10395010395010396No Hit
AAAACCGTTCAGAGCTGCCTTGTTTTTAAGTGGCTAATGTAGCACCATGT10.10395010395010396No Hit
AAATACCGTTCAGAGCTGCCACACACACACCCACAGAAACACACACACAG10.10395010395010396No Hit
AAATACCGTTCAGAGCTGCCTACGGTAGCACTGCCTTGTGTTGAAGTGGC10.10395010395010396No Hit

[FAIL]Adapter Content

Adapter graph