FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008153351

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008153351
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10293
Total Bases1.4 Mbp
Sequences flagged as poor quality0
Sequence length141-145
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGGACATCTTATGGTGCACTGAAATGGAAAGGGTATTTGGTTTCCCAGT449743.68988633051589No Hit
TGCCCTCTCTGCCTTTTCTCCCCCAGGGTATTTGGTTTCCCAGTCCACTA140513.650053434372875No Hit
TGCCATCTTGCCACATCTTAGAAGTTTAGTTGAAATCATTGAACATGGTC105110.210822889342271No Hit
AAGGTGGATGGTGATGTGGTCTTCAATTTAGCCACCTGCTTCCGGGCTGA103110.016516078888566No Hit
GAGGACATCTTATGGGGGCAAACTGAGGTATTGAGGAGACCAAGTCTCTG2582.506557854852813No Hit
GAGGACATCTTATGGTGGCAAACTGAGGTATTGAGGAGACCAAGTCTCTG2312.244243660740309No Hit
TTCTGCAGTTTGGCTGAATAGTTGATATATTGAGAGAATCTGGATGATAT2132.0693675313319733No Hit
TGCCATCTTGCCACATCTGTCTCGGTGGTCTCGCCACTCTGTGCCTCTTG700.6800738365879724No Hit
TGCCATCTTGCCACATCTACTGGGAGTGCTCTCAGCCAGCAGCCTTCAGC620.6023511124064899No Hit
GAGGACATCTTGCCACATCTTAGAAGTTTAGTTGAAATCATTGAACATGG360.34975225881667155No Hit
TGCCATCTTGCCACATCTGACCCCATGATATGTATTGTTAACTGACAGAA280.272029534635189No Hit
TGCCATCTTGCCACATCTTACCCCATGATATGTATTGTTAACTGACAGAA270.2623141941125036No Hit
TGCCATCTTGCCACATCTACAAAAGCAGTATCTGAATCTCTGCATCCAGC250.242883513067133No Hit
TGCCATCTTGCCACATCAAGGGTATCCGCCAACTTGAGGAGACCAAGTCT220.21373749149907703No Hit
AAGGTGGATGTGATGTGGTCTTCAATTTAGCCACCTGCTTCCGGGCTGAT190.18459146993102107No Hit
GAGGACATCTCATGGGGGCAAACTGAGGTATTGAGGAGACCAAGTCTCTG180.17487612940833577No Hit
GAGGACATCTTATGGTGCAAACTGAGGTATTGAGGAGACCAAGTCTCTGC180.17487612940833577No Hit
AGGTGGATGGTGATGTGGTCTTCAATTTAGCCACCTGCTTCCGGGCTGAT150.1457301078402798No Hit
GAGGACATCTTATGGGGCAAACTGAGGTATTGAGGAGACCAAGTCTCTGC150.1457301078402798No Hit
TGCCATCTTGCCACATCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTAC150.1457301078402798No Hit
GAGGACATCTTATGGTGCACTGAAATGGGAAGGGTATTTGGTTTCCCAGT140.1360147673175945No Hit
GAGGACATCTTATGGTGCACTGAAATGGAAGGGGTATTTGGTTTCCCAGT140.1360147673175945No Hit
GAGGACATCTTATGGTGTACTGAAATGGAAAGGGTATTTGGTTTCCCAGT130.12629942679490916No Hit
GAGGACATCTTATGGTGCATGGGGGCAAACTGAGGTATTGAGGAGACCAA110.10686874574953852No Hit
GAGGACATCTATGGTGCACTGAAATGGAAAGGGTATTTGGTTTCCCAGTC110.10686874574953852No Hit
GAGGACATCTTATGGTGCACTGAAATGGAGAGGGTATTTGGTTTCCCAGT110.10686874574953852No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)