FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008153489

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008153489
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22891
Total Bases3.3 Mbp
Sequences flagged as poor quality0
Sequence length140-145
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGGACATCTTATGGTGCACTGAAATGGAAAGGGTATTTGGTTTCCCAGT1025444.79489755799222No Hit
TGCCCTCTCTGCCTTTTCTCCCCCAGGGTATTTGGTTTCCCAGTCCACTA662228.92839980778472No Hit
TTCTGCAGTTTGGCTGAATAGTTGATATATTGAGAGAATCTGGATGATAT9304.062732078109301No Hit
TGCCATCTTGCCACATCTTAGAAGTTTAGTTGAAATCATTGAACATGGTC8913.8923594425756844No Hit
AAGGTGGATGGTGATGTGGTCTTCAATTTAGCCACCTGCTTCCGGGCTGA8813.8486741514132192No Hit
GAGGACATCTTATGGGGGCAAACTGAGGTATTGAGGAGACCAAGTCTCTG2341.022235813201695No Hit
GAGGACATCTTATGGTGGCAAACTGAGGTATTGAGGAGACCAAGTCTCTG1650.7208073041806823No Hit
AAGGTGGATGGTGATGTGGTCTACTTCGTTGAGGAGACCAAGTCTCTGCT1010.4412214407409025No Hit
TGCCATCTTGCCACATCTTACTAGGACGCCAAAAAAGGGGAAAGGGGGCA410.17910969376610894No Hit
TGCCATCTTGCCACATCTTACTAGGACGCCAAAAAAGGGGAAAGGGGCAA390.17037263553361584No Hit
AAGGTGGATGCCGCTGGTCTACTTCGTTGAGGAGACCAAGTCTCTGCTAC380.16600410641736926No Hit
TGCCCTCTCTGCCTTTCTCCCCCAGGGTATTTGGTTTCCCAGTCCACTAT330.14416146083613646No Hit
GAGGACATCTTATGGTGCACTGAAATGGGAAGGGTATTTGGTTTCCCAGT320.1397929317198899No Hit
GAGGACATCTTATGGTGCACTGAAATGGAGAGGGTATTTGGTTTCCCAGT320.1397929317198899No Hit
TGCCATCTTGCCACATCTTACTAGGACGCCAAAAAAGGGGGGGCAAACTG300.1310558734873968No Hit
TGCCATCTTGCCACATCTTACTAGGACGCCAAAAAAGGGGGGCAAACTGA260.11358175702241055No Hit
GAGGACATCTTATGGTGTACTGAAATGGAAAGGGTATTTGGTTTCCCAGT260.11358175702241055No Hit
GAGGACATCTTATGGTGCACTGAAATGGAAGGGGTATTTGGTTTCCCAGT260.11358175702241055No Hit
TGCCATCTTGCCACATCTTACTAGGACGCCAAAAAAGGGGGCAAACTGAG240.10484469878991744No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)