FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008153522

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008153522
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences371
Total Bases53.7 kbp
Sequences flagged as poor quality0
Sequence length143-145
%GC61

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TACCTCAGTTTGCCACCATAAGATGTCCTCAACTGGTGTAGAACCATGTC7419.946091644204852No Hit
TACCTCAGTTTGCCCCCATAAGATGTCCTCAACTGGTGTAGAACCATGTC4512.129380053908356No Hit
CGAAGTAGACCACATCACCATCCACCTTAACTGGTGTAGAACCATGTCGT349.164420485175203No Hit
CGAAGTAGACCAGCGGCATCCACCTTAACTGGTGTAGAACCATGTCGTCA277.277628032345014No Hit
TACCTCAGTTTGCACCATAAGATGTCCTCAACTGGTGTAGAACCATGTCG112.964959568733154No Hit
GTTGGCGGATACCCTTCTGTGTTGGCGGATACCCTTCTGTGTTGGCGGAT82.15633423180593No Hit
GTTGGCGGATACCCTTGATGTGGCAAGATGGCAAACTGGTGTAGAACCAT71.8867924528301887No Hit
CGAAGTAGACCAGCGGCATCACCATCCACCTTAACTGGTGTAGAACCATG71.8867924528301887No Hit
TACCTCAGTTTGCCCCCGTGCACCATAAGATGTCCTCAACTGGTGTAGAA41.078167115902965No Hit
GTTGGCGGATACCCTTCCATTCTGTTGAAGATCGGAAGAGCGATGTGGCA41.078167115902965No Hit
GTTGGCGGATACCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC41.078167115902965Clontech Universal Primer Mix Long (96% over 26bp)
TACCTCAGTTTGCCCCAGTGCACCATAAGATGTCCTCAACTGGTGTAGAA41.078167115902965No Hit
CGAAGTAGACCAGCGACATCACCATCCACCTTAACTGGTGTAGAACCATG30.8086253369272237No Hit
TACCTCAGTTTGCCCCCATGAGATGTCCTCAACTGGTGTAGAACCATGTC30.8086253369272237No Hit
GTTGGCGGATACCCTTCCATTCTGTTGAAGATCGGAAGAGAGATGTGGCA30.8086253369272237No Hit
GTTGGCGGATACCCTTCCATCTTCAACAGATGTGGCAAGATGGCAAACTG30.8086253369272237No Hit
GTTGGCGGATACCCTTCCAGATGTGGCAAGATGGCAAACTGGTGTAGAAC30.8086253369272237No Hit
GTTGGCGGATACCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACT20.5390835579514826Clontech SMART CDS Primer II A (96% over 26bp)
GTTGGCGGATACCCTTCCGTTCTGTTGAAGATCGGAAGAGAGATGTGGCA20.5390835579514826No Hit
GTTGGCGGATACCCTTCTGTGTTGGCGGATACTAAGATGTGGCAAGATGG20.5390835579514826No Hit
GTTGGCGGATACCCTTCCATGTTGGCGGATACCCTTCTGTGTTGGCGGAT20.5390835579514826No Hit
TACCTCAGTTTGCCCCCATGCACCATAAGATGTCCTCAACTGGTGTAGAA20.5390835579514826No Hit
GTTGGCGGATACCCTTCCGTTCTGTTGAAGATCGGAAGAGCGATGTGGCA20.5390835579514826No Hit
TACCTCAGTTTGCCCACCATAAGATGTCCTCAACTGGTGTAGAACCATGT20.5390835579514826No Hit
TACCTCAGTTTGCCCCCAGTGCACCATAAGATGTCCTCAACTGGTGTAGA20.5390835579514826No Hit
GTTGGCGGATACCCTTCCGTGTTGGCGGATACCCTTCTGTGTTGGCGGAT20.5390835579514826No Hit
CGAAGTAGACAGCGGCATCCACCTTAACTGGTGTAGAACCATGTCGTCAG20.5390835579514826No Hit
GTTGGCGGATACCCTTCCATTCTGTTGAAGATCGGAAGAAAGATGTGGCA20.5390835579514826No Hit
GTTGGCGGATACCCATGTACTCTGCGTTGATACCACTCACCATCCACCTT10.2695417789757413Clontech SMART CDS Primer II A (95% over 22bp)
GTTGGCGGATACCCTTCTGTGTTGGCGGATACCCATGTGTTGTCGGATAA10.2695417789757413No Hit
GTTGGCGGATACCCTTCTGTGTTGGCGGATACCCTTGTGTGGTGGCGGAT10.2695417789757413No Hit
TACCTCAGTTTGCCCCCATGTCCCTTACACACACGCAAAATACTCCTTCA10.2695417789757413No Hit
TACCTCAGTTTGCCACCATAAGATGTCCTCAACTGGTGTAGAACAATGTC10.2695417789757413No Hit
GTTGGCGGATACCCTTCAGTGTTGGCGGATACCCTTCTGATATGGCGGAT10.2695417789757413No Hit
TACCTCAGTTTGCCCCCATAAGGTCCTCAACTGGTGTAGAACCATGTCGT10.2695417789757413No Hit
GTTGGCGGATACCAAGATGTGGCAAGATGGCAAACTGGTGTAGAACCATG10.2695417789757413No Hit
TTACTCAGTTTGCCCCCATTAGATGTCCTAAACAGGTGTAGAACCATGTA10.2695417789757413No Hit
GTTGGCGGATACCCATGTACTCTGCGTTGATACCACTGTCCCATGTACTC10.2695417789757413Clontech SMART CDS Primer II A (95% over 23bp)
CGAAGTAGACCAGCGGCATCTCGGCCCCACCCTGGACCTTAGCTCAGCAC10.2695417789757413No Hit
CTTTGAAGAAAACATTACAATACACCTTAACTGGTGTAGAACCATGTAGT10.2695417789757413No Hit
GTTGGCGGATACCCTTCCGTGTTGGCGGATACCCTTCGGTGTTGGCGGAT10.2695417789757413No Hit
GTTGGCAAGATGGCAAACTGGTGTAGAACCATGTCGTCAGTGTAGATCTC10.2695417789757413No Hit
GTTGGCGGATACCCTCCCCCTGTGTTGGCGGATACCCCTGTGTTGGCGGA10.2695417789757413No Hit
TGCCTCAGTTTGCCCCCATAAGATGTCCTCAACTGGTGTAGAACCATGTC10.2695417789757413No Hit
GTTGGCGGATACCCTTCCTGTGTTGGCGGATACCCATGTACTCTGCGTTG10.2695417789757413No Hit
TAACTCAGATTCCCAACAAAAGATGTCCTCAACTGGTGTAGAACCATGTC10.2695417789757413No Hit
GTTGGCGGATACCCAGATGTGGCAAGATGGCAACTGGTGTAGAACCATGT10.2695417789757413No Hit
GTTGGCGGATACCCTTCTGTGTTGGCGGATACAATTCTGTGTTGGCGGAT10.2695417789757413No Hit
TACCTCAGTTTGCCACCATAAGATGTCATCAACTGGTGTAGAACCATGTC10.2695417789757413No Hit
GTTGGCGGATACCCTTCTGTGTTGGCGGATACCCTTCTGTGTTGGCGGCT10.2695417789757413No Hit
GTTGGCGGATACCCATGTACTCTGCGTTGATACCACTGCTTCAGTGCACC10.2695417789757413Clontech SMART CDS Primer II A (96% over 26bp)
CGAAGTAGACCAGATCACCATCCACCTTAACTGGTGTAGAACCATGTCGT10.2695417789757413No Hit
GTTGGCGGATACCCTTCCCCCCTAAGATGTGGCAAGATGGCAAACTGGTG10.2695417789757413No Hit
GTTGGCGGATACCCATGTACTCTGCGTTGATACCACTGCTTTTAACGTTA10.2695417789757413Clontech SMART CDS Primer II A (96% over 26bp)
GTTGGCGGATACCCTTCGAGTCTGCGTTGATACCACTGCTTAAGAAAAGG10.2695417789757413Clontech Universal Primer Mix Long (95% over 23bp)
GTTGGCGGATACCCTTCCTGTGTTGGCGGATACCCCCAAGATGTGGCAAG10.2695417789757413No Hit
GTTGGCGGATACCCTTCTGTGTTGGCGGATACCCTTGTGTTATGGGGGAT10.2695417789757413No Hit
GTTGGCGGATACCCTTCTGTGTTGGCTGATTCCCATGTGTGATGGCGGCA10.2695417789757413No Hit
GTTGGCGGATACCCTTGTGTGTTGGCGGATACACTTATGTGTTCGCGGTT10.2695417789757413No Hit
GAAGTAGACCAGCCGCAAACACCTTAACTGGAGTAGAAACATCTCGTCAG10.2695417789757413No Hit
GTTGGCGGATACCCTTCCATTCTGTTGATGATCGGAAGAGAGATGTGGCA10.2695417789757413No Hit
GTTGGCGGATACCCTTCCCCCCCCTAAGATGTGGCAAGATGGCAAACTGG10.2695417789757413No Hit
GTTGGCGGATACCCTTCTGTGTTGGCGGATACAAATCTGTGTTGTCGGAG10.2695417789757413No Hit
GTTGGCGGATACCCATGTACTCTGCGTTGATACCACTGCTTTCTAAGATG10.2695417789757413Clontech SMART CDS Primer II A (96% over 26bp)
GTTGGCGGATACCCTTCAATGTTGGCGGATGCCCTGGGGTGGTGTGGGCT10.2695417789757413No Hit
GTTGGCGGATACCCCTGTGTTGGCGGATACCCCTGTGTTGGAGGATACCC10.2695417789757413No Hit
GTTGGCGGATACCCTTCTGTGTTGGCGGATTCCCATGGTTGTTTGCGGAT10.2695417789757413No Hit
TACCTCAGTTTGCCCCATAAGATGTCCTCAACTGGTGTAGAACCATGTCT10.2695417789757413No Hit
GTTGGCGGATACCCTTCTGTTCTGTTGAAGATCGGAAGAGAGATGTGGCA10.2695417789757413No Hit
GTTGGCGGATACCCTTCACAGATGTGGCAAATGGCAAACTGGTGTAGAAC10.2695417789757413No Hit
TACCTCATTTGCCACCATAAGATGTCCTCAACTGGTGTAGAACCATGTCG10.2695417789757413No Hit
CGAAGTAGACCAGCGGCATCCACCTTAACTGGTGTAGAACCATGCGTCAG10.2695417789757413No Hit
TACCTAGTTTGCCCCAGTGCACCATAAGATGTCCTCAACTGGTGTAGAAC10.2695417789757413No Hit
GTTGGCGGATACCCTTCTAAGATGTGGCAAGATGGCAAACTGGTGTAGAA10.2695417789757413No Hit
TACCTCGTTTGCCCCCATAAGATGTCCTCAACTGGTGTAGAACCATGTCG10.2695417789757413No Hit
TACCTCAGTGCACCATAAGATGTCCTCAACTGGTGTAGAACCATGTCGTC10.2695417789757413No Hit
TACCTCAGTTTGCCCCCATGCTTGGTCTCCCTAAGATGTGGCAAGATGGC10.2695417789757413No Hit
GTTGGCGGATACCCTTCGAGTCTGCGTTGATACCAGCGCAGGTCCTCTGC10.2695417789757413No Hit
CGAAGTAGACCACATCACCATCCACCTTAACTGGTGTAGAACCATGTCGC10.2695417789757413No Hit
TACCTCAGTTTGCCCCATAAGATGTCCTCAACTGGTGTAGAACCATGTCG10.2695417789757413No Hit
TAACTCAGATTCCCACCAAAATATGTCCTCAACTGGTGTAGAACCATGTC10.2695417789757413No Hit
TACCTCAGTTTGCCCCCATAAGATGTCCTTAACTGGTGTAGAACCATGTC10.2695417789757413No Hit
CGAAGTAGACATCACCATCCACCTTAACTGGTGTAGAACCATGTCGTCAG10.2695417789757413No Hit
GTTGGCGGATACCCTTCTGTGTTGGCGGATACCCTTCTGTGGTGGCCGAT10.2695417789757413No Hit
CGAAGTAGACCACATCACCATCCACCTTAACTGGTGTAGAACGATGTCGT10.2695417789757413No Hit
GTACTCAGATTCCCAACCAAAGATGTCCTCAACTGGTGTAGAACAATGTC10.2695417789757413No Hit
TACCTCAGTTTGCCACCATAGGATGTCCTCAACTGGTGTAGAACCATGTC10.2695417789757413No Hit
CGAAGTAGACCACATCACCTCCACCTTAACTGGTGTAGAACCATGTCGTC10.2695417789757413No Hit
TACCCCAGTTTGCCCCCATAAGATGTCCTCAACTGGTGTAGAACCATGTC10.2695417789757413No Hit
GTTGGCGGATACCCTTCTGTGTTGGCTGATACACTTCTGTGTTGGCTGAT10.2695417789757413No Hit
TACCTCAGTTTGCCACCATAAGATGTCCTCAACTGGTGTAGAACATGTCG10.2695417789757413No Hit
GTTGGCGGATACCCTTCTGTGTTGGCGGATAAACATCTGTGATGTCGGAT10.2695417789757413No Hit
GTTGGCGGATACCCTTCTGTGTTGGCGGATACCCTTCTGAGATGGCGGCT10.2695417789757413No Hit
GTTGGCGGATACCCATGTACTCTGCGTTGATACCACTGCTTGAAAAAAAA10.2695417789757413Clontech SMART CDS Primer II A (96% over 26bp)
GTTGGCGGATACCCTTGAAATCTGCGTTGATACCACTGCTGCAGTGCACC10.2695417789757413Clontech Universal Primer Mix Long (95% over 22bp)
GTTGGCGGATACCCTTCTGTGTTGGCGGATACCCTTCTGTGATGGCGGAT10.2695417789757413No Hit
TACCTCAGTTTGCCCCCATTACGGTAGCAGAGACTTGTCTCCTCAAGTTG10.2695417789757413No Hit
GTTGGCGGATACCCTTCTGTGTTGGCGGATACCCTGCTGTGTTGGCGGAT10.2695417789757413No Hit
GTTGGCGGATACCCTTGCTGTGTTGGCGGATACCCTTGCTGTGTTGGAGG10.2695417789757413No Hit
CGAAGTAGACCACCAGCACCATCCACCTTAACTGGTGTAGAACCATGTCG10.2695417789757413No Hit
CGAAGTAGACCAGCGGAATCCACCAAAACTGGATTAGAACCATGTCGACA10.2695417789757413No Hit
GTTGGCGGATACCCTTCTGTGTTGGCGGATACCCTTCTGTGTTGGCTGAT10.2695417789757413No Hit
GTTGGCGGATACCCTTCTGTGTTGGCGGATAACCTTCTCTGTTGGCGGAT10.2695417789757413No Hit
TAACTCAGTTAGCAACCATAAGATGTCCTCAACTGGTGTAGAACCAAGTC10.2695417789757413No Hit
GTTGGCGGATACCCTTCTGTGTTGGCGGATACCCTTGTGTGTTGGCGGAT10.2695417789757413No Hit
GTTGGCGGATACCCTTCTGTGTTGGCGTCAACCCAGCTGTGGTGTGTGCT10.2695417789757413No Hit
GTTGGCGGATACCCTAGATGTGGCAAGATGGCAAACTGGTGTAGAACCAT10.2695417789757413No Hit
GTTGGCGGATACCCTTCTGTGTTGGCGGATACCCCCCCTGTGTTGGCGGA10.2695417789757413No Hit
TACCTCAGTTTGCCCCCATAAGATGTGGCAAGATGGCAAACTGGTGTAGA10.2695417789757413No Hit
TACCTCAGTTTGCCCCCATAAGATGTCCTCAACTGGTGTAGAACAATGTC10.2695417789757413No Hit
TAACTCAGATACCCAACAAAAGATGTCCTCAACTGGTGTAGAACCATGTC10.2695417789757413No Hit
TTACTCAGTTTGCCAACAAAAGATGTCCTCAACTGGTGTAGAACCATGTC10.2695417789757413No Hit
TACCTCAGTTTGCCTCCATAAGATGTCCTCAACTGGTGTAGAACCATGTC10.2695417789757413No Hit
TACCTCAGTTTGCCCCCCATAAGATGTCCTCAACTGGTGTAGAACCATGT10.2695417789757413No Hit
TAACTCAGTTTGCCACCATAAGATGTCCTCAACTGGTGTAGAACCATGTC10.2695417789757413No Hit
GTTGGCGGATACCCATGGAGTCTGCGTTGATACCCCTGCTGGCCTGTACT10.2695417789757413No Hit
CGAAGTAGACCACATCACATCCACCTTAACTGGTGTAGAACCATGTCGTC10.2695417789757413No Hit
GTTGGCGGATACCCTTCCTGTGGCAAGATGGCACAAGATGTGGCAAGATG10.2695417789757413No Hit
GTTGGCGGATACCCTGTGTTGGCGGATACCCGTGTTGGCGGATACCCTTC10.2695417789757413No Hit
GTTGGCGGATACCCTTCTGTGTTGGCGGATACCCTTCTCTGTTGGCGGAT10.2695417789757413No Hit
GTTGGCGGATACCCTTCGATTTTGGGGGCTGCCCGTGGGTGTGGGCGTAT10.2695417789757413No Hit
TACCTCAGTTTGCCCCAATAAGATGTCCTCAACTGGTGTAGAACCATGTC10.2695417789757413No Hit
GTTGGCGGATACCCTTCTGTGTTGGCGGATACCCTTCTCTGATGGCGTCT10.2695417789757413No Hit
GTCGGCGGATACCCTTCTGTGTTGGCGGATACCCTTCTGTGTTGGCGGAT10.2695417789757413No Hit
TAACACAATAACCAACCATAAGATGTCCTCAACTGGTGTAGAACCATGTC10.2695417789757413No Hit
GTTGGCGGATACCCTTCCATATGTGGCAAGATGGCAAACTGGTGTAGAAC10.2695417789757413No Hit
GTTGGCGGAAACCCAAGATGTGGCAAGATGGCAAACTGGTGTAGAACCAT10.2695417789757413No Hit
TACCTCAGTTTGCCCCATAGATGTCCTCAACTGGTGTAGAACCATGTCGT10.2695417789757413No Hit
GTGTCGCTACCTCAGTTTGCCATCTGACCACATCACCATCCACCTTAACT10.2695417789757413No Hit
TACCTCAGTTTGCCACCATAAGATGTCCTCAACTGGTGTAGAACCATTTC10.2695417789757413No Hit
GTTGGCGGATACCCCTGTGTTGGCGGATACCCCTGTGTTGAAGGATACCC10.2695417789757413No Hit
CGAAATAGACCCATCACCATCCACCTTAACTGGTGTAGAACCATGTCGTC10.2695417789757413No Hit
GTTGGCGGATACCCTGTGTTGGCGGATACCCTTCTGTGTTGGCGGATACC10.2695417789757413No Hit

[FAIL]Adapter Content

Adapter graph