FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008153819

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008153819
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2656
Total Bases385 kbp
Sequences flagged as poor quality0
Sequence length141-145
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCCCTCTCTGCCTTTTCTCCCCCAGGGTATTTGGTTTCCCAGTCCACTA99537.46234939759036No Hit
AAGGTGGATGGTGATGTGGTCTTCAATTTAGCCACCTGCTTCCGGGCTGA41115.474397590361447No Hit
TGCCATCTTGCCACATCTTAGAAGTTTAGTTGAAATCATTGAACATGGTC38214.38253012048193No Hit
TTCTGCAGTTTGGCTGAATAGTTGATATATTGAGAGAATCTGGATGATAT2178.170180722891567No Hit
GAGGACATCTTATGGTGGCAAACTGAGGTATTGAGGAGACCAAGTCTCTG521.957831325301205No Hit
GAGGACATCTTATGGGGGCAAACTGAGGTATTGAGGAGACCAAGTCTCTG441.6566265060240966No Hit
GAGGACATCTTGCCACATCTTAGAAGTTTAGTTGAAATCATTGAACATGG321.2048192771084338No Hit
TGCCGTCTAACCACATCTTAGAAGTTTAGTTGAAATCATTGAACATGGTC190.7153614457831325No Hit
TGCCATCTTGCCACATCTGTACCAGCTGCTAATGCTGGCTCAGCAAGGGT120.4518072289156626No Hit
TGCCATCTTGCCACATCTGTTGAAGATGGAAGGGTATCCGCCAACTTGAG120.4518072289156626No Hit
GAGGACATCTTATGGTGCAAACTGAGGTATTGAGGAGACCAAGTCTCTGC90.338855421686747No Hit
AAGGTGATGGTGATGTGGTCTTCAATTTAGCCACCTGCTTCCGGGCTGAT80.30120481927710846No Hit
TGCCATCTTGCCACATCTCTGAAAACTTCCGTGGAAGGGTATCCGCCAAC70.2635542168674699No Hit
TGCCATCTTGCCACATCTCTGAAAACTTCCATGGAAGGGTATCCGCCAAC70.2635542168674699No Hit
TGCCCTCTCTGCCTTTCTCCCCCAGGGTATTTGGTTTCCCAGTCCACTAT70.2635542168674699No Hit
TGCCATCTTGCCACATCTCCAGGGTGAAACCAGCCCAAGGGTATCCGCCA60.2259036144578313No Hit
TGCCATCTTGCCACATCTGTACCAGCTGCTAATGCTGGCTCAGGAAGGGT60.2259036144578313No Hit
AAGGTGGATGTGATGTGGTCTTCAATTTAGCCACCTGCTTCCGGGCTGAT60.2259036144578313No Hit
TGCCATCTTGCCACATCTTCATCAGCTGATCAATACAAAACCTTGTTTTA60.2259036144578313No Hit
TGCATCTTGCCACATCTTAGAAGTTTAGTTGAAATCATTGAACATGGTCT50.18825301204819278No Hit
TGCCATCTTGCCACATCTTGTTCAGTCATACGTCGCTTGAAGCGTCCATG50.18825301204819278No Hit
TGCCCTCTCTGCCTTTTCTCCCCCAGGGTATTTGGTTTCCCAGTCCACCA50.18825301204819278No Hit
TGCCATCTTGCCACATCTCGTTCAGTCATACGTCGCTTGAAGCGTCCATG50.18825301204819278No Hit
AAGGTGGATGGTGATGTGGTCTACTTCGTTGAGGAGACCAAGTCTCTGCT50.18825301204819278No Hit
GAGGACATCTTATGGGGCAAACTGAGGTATTGAGGAGACCAAGTCTCTGC50.18825301204819278No Hit
TGCCCTCTCTGCCTTTTCTCCCCAGGGTATTTGGTTTCCCAGTCCACTAT40.15060240963855423No Hit
TGCCATCTTGCCACATCTTGGAAGTTTAGTTGAAATCATTGAACATGGTC40.15060240963855423No Hit
TGCCATCTTGCCACATCTCACCCAAGGGTATCCGCCAACTTGAGGAGACC40.15060240963855423No Hit
GCCATCTTGCCACATCTTAGAAGTTTAGTTGAAATCATTGAACATGGTCT40.15060240963855423No Hit
TGCCATCTTGCCACATCTGTTGAAGATGGAAGGGTATCCGCCAACACAGA40.15060240963855423No Hit
TGCCATCTTGCCACATCAAGGGTATCCGCCAACTTGAGGAGACCAAGTCT40.15060240963855423No Hit
AAGGTGGTGGTGATGTGGTCTTCAATTTAGCCACCTGCTTCCGGGCTGAT40.15060240963855423No Hit
AAGGTGGAGGTGATGTGGTCTTCAATTTAGCCACCTGCTTCCGGGCTGAT40.15060240963855423No Hit
AGGTGGATGGTGATGTGGTCTTCAATTTAGCCACCTGCTTCCGGGCTGAT40.15060240963855423No Hit
TGCCATCTTGCCACATCTTAGGGTATCCGCCAACTTGAGGAGACCAAGTC40.15060240963855423No Hit
TGCCCTCTCTGCCTTTTCTCCCCCAGGGTATTTGGTTCCCCAGTCCACTA40.15060240963855423No Hit
TGCCATCTGCCACATCTTAGAAGTTTAGTTGAAATCATTGAACATGGTCT40.15060240963855423No Hit
AAGGTGGATGCCGCTGGTCTACTTCGTTGAGGAGACCAAGTCTCTGCTAC30.11295180722891565No Hit
TGCCATCTTGCCACATCTTCAGGGTGAAACCAGCCCAAGGGTATCCGCCA30.11295180722891565No Hit
TGCCATCTTGCCACATCTCTGGGAAGGGTATCCGCCAACTTGAGGAGACC30.11295180722891565No Hit
AAGGTGGATGGTGATGTGGTCAGTGTGCAAACTGAGGTAGCGACACTTGA30.11295180722891565No Hit
TGCCATCTTGCCACATCTTGGTATCCGCCAACTTGAGGAGACCAAGTCTC30.11295180722891565No Hit
TGCCATCTTGCCGCATCTTAGAAGTTTAGTTGAAATCATTGAACATGGTC30.11295180722891565No Hit
TGCCTCTCTGCCTTTTCTCCCCCAGGGTATTTGGTTTCCCAGTCCACTAT30.11295180722891565No Hit
AAGGTGGATGGTGATGTGTCTTCAATTTAGCCACCTGCTTCCGGGCTGAT30.11295180722891565No Hit
TGCCCTCTCTGCCTTTTCTCCCCCAGGGTACTTGGTTTCCCAGTCCACTA30.11295180722891565No Hit
TGCCATCTTGCCACATCTTAGCAGGGTATCCGCCAACTTGAGGAGACCAA30.11295180722891565No Hit
TGCCATCTTGCACATCTTAGAAGTTTAGTTGAAATCATTGAACATGGTCT30.11295180722891565No Hit
TGCCGTCTTGCCACATCTTAGAAGTTTAGTTGAAATCATTGAACATGGTC30.11295180722891565No Hit
AAGGTGGATGGTGATGTGGTCTTCAATTTAGCCACCTGCTTCCGGGCCGA30.11295180722891565No Hit
GAGGACATCTTGCCACATCTTGTATTTAAGTCGTCTGCAAAGGATTCGGC30.11295180722891565No Hit
GAGGACATCTTATGGTGCACTGAAATGGAAAGGGTATTTGGTTTCCCAGT30.11295180722891565No Hit
TGCCCTCTCTGCCTTTTCCCCCCCAGGGTATTTGGTTTCCCAGTCCACTA30.11295180722891565No Hit
TGCCCTCTCTGCCTTTTCTCCCCCAGGATATTTGGTTTCCCAGTCCACTA30.11295180722891565No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)