FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008154014

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008154014
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14971
Total Bases2.1 Mbp
Sequences flagged as poor quality0
Sequence length139-145
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTCGCTACCTCAGTTTGCCCCCATGTCCCTTACACACACGCAAAATAC859757.424353750584466No Hit
GTTGGCGGATACCCTTCCATAAAGGCTTTAACACAGAATCAAAAGATTCG322521.54164718455681No Hit
TACCTCAGTTTGCCCCCATAAGATGTCCTCTTGCCATGTAGAACCATGTC3172.1174270255827934No Hit
TACCTCAGTTTGCCACCATAAGATGTCCTCTTGCCATGTAGAACCATGTC2281.5229443590942489No Hit
GTTGGCGATACCCTTCCATAAAGGCTTTAACACAGAATCAAAAGATTCGA760.507648119698083No Hit
TTGGCGGATACCCTTCCATAAAGGCTTTAACACAGAATCAAAAGATTCGA620.41413399238527826No Hit
GTTGGCGGATACCCTTGTGCTGAGCCAGCATTAGCAGCTGGTAGATGTGG600.4007748313405918No Hit
GTTGCGGATACCCTTCCATAAAGGCTTTAACACAGAATCAAAAGATTCGA570.3807360897735622No Hit
GTTGGCGGATACCCTTCTGTGTTGGCGGATACCCTTCTGTGTTGGCGGAT470.31394028455013023No Hit
GTTGGCGGTACCCTTCCATAAAGGCTTTAACACAGAATCAAAAGATTCGA470.31394028455013023No Hit
GTGGCGGATACCCTTCCATAAAGGCTTTAACACAGAATCAAAAGATTCGA350.23378531828201188No Hit
GTTGGCGGATACCTTCCATAAAGGCTTTAACACAGAATCAAAAGATTCGA330.2204261572373255No Hit
CGAAGTAGACCACATCACCATCCACCTTTTGCCATGTAGAACCATGTCGT330.2204261572373255No Hit
GTGTCGCTACCTCAGTTTGTCCCCATGTCCCTTACACACACGCAAAATAC290.19370783514795273No Hit
GTTGGCGGAACCCTTCCATAAAGGCTTTAACACAGAATCAAAAGATTCGA270.18034867410326633No Hit
GTTGGCGGATCCCTTCCATAAAGGCTTTAACACAGAATCAAAAGATTCGA250.16698951305857992No Hit
GTTGGGGATACCCTTCCATAAAGGCTTTAACACAGAATCAAAAGATTCGA250.16698951305857992No Hit
TACCTCAGTTTGCACCATAAGATGTCCTCTTGCCATGTAGAACCATGTCG250.16698951305857992No Hit
GTGTCGCTACCTCAGTTGCCCCCATGTCCCTTACACACACGCAAAATACT250.16698951305857992No Hit
GTGTCGCTACCTCAGTTTGCCCCCATGTCCCCTACACACACGCAAAATAC250.16698951305857992No Hit
GTGTCGCTACCTCAGTTTGCCCCCATGCCCCTTACACACACGCAAAATAC230.15363035201389352No Hit
GTGTCGCTACCTCAGTTTGCCCCCATGTCCCTTACACACACACAAAATAC220.1469507714915503No Hit
GTGTCGCTACCTCAGTTTGCCCCCATGTCCCTTACGCACACGCAAAATAC220.1469507714915503No Hit
GTGTCGCTACCTCAGTTTGCCCCCATGTCCCTTACACACACGCAAAACAC220.1469507714915503No Hit
GTTGGCGGATACCCTTCTTATGGCTGAGTAATATTCAATTGTGTATTATT220.1469507714915503No Hit
GTGTCGCTACCTCAGTTTGCCCCATGTCCCTTACACACACGCAAAATACT190.12691202992452075No Hit
GTTGGCGGATACCCTTTAGCAAGCTGCTCTAAGTGTTGGCTGCTAACAGC180.12023244940217753No Hit
CGAAGTAGACCAGCGGCATCCACCTTTTGCCATGTAGAACCATGTCGTCA180.12023244940217753No Hit
GTTGGCGGATACCCTTCCTACCTCTTGGGCTTTTCTTTAAAATGGATTCT170.11355286887983435No Hit
GTTGGCGGATACCCTTCCGGTTAGAAAACCAACAGAATAACAGGAAATGA170.11355286887983435No Hit
TACCTCAGTTTGCCCCATAAGATGTCCTCTTGCCATGTAGAACCATGTCG170.11355286887983435No Hit
GTGTCGCTACCTCAGTTTGCCCCCATGTCCCTTACACACACGCAAAGTAC170.11355286887983435No Hit
GTGTCGCTACCTCAGTTTGCCCCCATGTCCCTTACACACGCGCAAAATAC170.11355286887983435No Hit
GTGTCGCTACCTCAGTTTGCACCCATGTCCCTTACACACACGCAAAATAC160.10687328835749116No Hit
GTTGGCGGATACCCTTGAAAGCAGAGCTGGAGTAAAGACTTGGGTGTGGA160.10687328835749116No Hit
TACCTCAGTTTGCCCCCATGAGATGTCCTCTTGCCATGTAGAACCATGTC160.10687328835749116No Hit
GTGTCGCTACCTCAGTTTGCCCCCATGTCCCTTACACACACGCAAAATAT160.10687328835749116No Hit
GTGTCGCTACCTCAGTTTGCCCCCACGTCCCTTACACACACGCAAAATAC160.10687328835749116No Hit
GTGTCGCTACCTCAGTTTGCCCCCATGTCCCTTACACCCACGCAAAATAC150.10019370783514794No Hit
GTTGGCGGATACCCTTCTTAGAGCGGTCGAAGACCACGACCTTGATAGAT150.10019370783514794No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)