FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008154125

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008154125
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15948
Total Bases2.3 Mbp
Sequences flagged as poor quality0
Sequence length140-145
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGGTGGATGGTGATGTGGTCTTCAATTTAGCCACCTGCTTCCGGGCTGA670442.03661901178831No Hit
TTCTGCAGTTTGGCTGAATAGTTGATATATTGAGAGAATCTGGATGATAT254515.958113870077753No Hit
GAGGACATCTTATGGTGCACTGAAATGGAAAGGGTATTTGGTTTCCCAGT215013.481314271381992No Hit
TGCCCTCTCTGCCTTTTCTCCCCCAGGGTATTTGGTTTCCCAGTCCACTA13598.521444695259593No Hit
TGCCATCTTGCCACATCTTATTTAACAACTATTAAAGCAATCATCTTTGG4312.7025332330072738No Hit
TGCCATCTTGCCACATCTTAGAAGTTTAGTTGAAATCATTGAACATGGTC2631.6491096062202157No Hit
AGGTGGATGGTGATGTGGTCTTCAATTTAGCCACCTGCTTCCGGGCTGAT1430.8966641585151744No Hit
GAGGACATCTTATGGGGGCAAACTGAGGTACAGTCAAGACCAAGTCTCTG1330.8339603712064209No Hit
AAGGTGGATGTGATGTGGTCTTCAATTTAGCCACCTGCTTCCGGGCTGAT930.5831452219714071No Hit
AAGGTGATGGTGATGTGGTCTTCAATTTAGCCACCTGCTTCCGGGCTGAT910.5706044645096564No Hit
GAGGACATCTTATGGTGGCAAACTGAGGTACAGTCAAGACCAAGTCTCTG900.5643340857787811No Hit
AAGGTGGATGGTGATGTGGTCTACTTCGCAGTCAAGACCAAGTCTCTGCT750.4702784048156509No Hit
AAGGTGGTGGTGATGTGGTCTTCAATTTAGCCACCTGCTTCCGGGCTGAT560.3511412089290193No Hit
AAGGTGGATGCCGCTGGTCTACTTCGCAGTCAAGACCAAGTCTCTGCTAC520.32605969400551793No Hit
AAGTGGATGGTGATGTGGTCTTCAATTTAGCCACCTGCTTCCGGGCTGAT470.2947078003511412No Hit
AAGGTGGATGGTATGTGGTCTTCAATTTAGCCACCTGCTTCCGGGCTGAT300.18811136192626035No Hit
AAGGTGGATGGTGATGTGTCTTCAATTTAGCCACCTGCTTCCGGGCTGAT240.15048908954100826No Hit
TTCTGCAGTTGGCTGAATAGTTGATATATTGAGAGAATCTGGATGATATT230.14421871081013293No Hit
AAGGTGGATGGTGTGTGGTCTTCAATTTAGCCACCTGCTTCCGGGCTGAT230.14421871081013293No Hit
AAGGTGGATGGTGATGTGGCCTTCAATTTAGCCACCTGCTTCCGGGCTGA200.1254075746175069No Hit
AAGGGGATGGTGATGTGGTCTTCAATTTAGCCACCTGCTTCCGGGCTGAT190.11913719588663155No Hit
AAGGTGGATGGGATGTGGTCTTCAATTTAGCCACCTGCTTCCGGGCTGAT190.11913719588663155No Hit
GAGGACATCTTATGGTGCAAACTGAGGTACAGTCAAGACCAAGTCTCTGC180.1128668171557562No Hit
TGCCATCTTGCCACATCTACCTGGCGCGAGGGAGGCAAGGGTATCCGCCA170.10659643842488085No Hit
AAGGTGGATGGTGATGCCGCTGGTCTACTTCGCAGTCAAGACCAAGTCTC160.1003260596940055No Hit
AAGGTGGAGGTGATGTGGTCTTCAATTTAGCCACCTGCTTCCGGGCTGAT160.1003260596940055No Hit
AAGGTGGATGGTGATGTGGTCTCCAATTTAGCCACCTGCTTCCGGGCTGA160.1003260596940055No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)