FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008154305

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008154305
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54251
Total Bases7.8 Mbp
Sequences flagged as poor quality0
Sequence length141-145
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGGACATCTTATGGTGCACTGAAATGGAAAGGGTATTTGGTTTCCCAGT2099638.70159075408748No Hit
TGCCCTCTCTGCCTTTTCTCCCCCAGGGTATTTGGTTTCCCAGTCCACTA1437226.491677572763635No Hit
TTCTGCAGTTTGGCTGAATAGTTGATATATTGAGAGAATCTGGATGATAT50649.334390149490332No Hit
TGCCATCTTGCCACATCTTAGAAGTTTAGTTGAAATCATTGAACATGGTC38607.115076219793183No Hit
GAGGACATCTTATGGGGGCAAACTGAGGTACAGTCAAGACCAAGTCTCTG8021.4783137638015889No Hit
GAGGACATCTTATGGTGGCAAACTGAGGTACAGTCAAGACCAAGTCTCTG5611.0340823210632062No Hit
TGCCATCTTGCCACATCTACACATAACCTCAGGAATCAGCCCTACACAAC2930.5400822104661666No Hit
TGCCATCTTGCCACATCTATGAATCTGGGGAAGGGTATCCGCCAACCAGT2890.5327090744871062No Hit
TGCCATCTTGCCACATCTTATTTAACAACTATTAAAGCAATCATCTTTGG1500.27649259921476105No Hit
TGCCATCTTGCCACATCTTAGGACGTGGCCATGGAAGGGTATCCGCCAAC1330.2451567713037548No Hit
GAGGACATCTTATGGTGCAAACTGAGGTACAGTCAAGACCAAGTCTCTGC1300.23962691931945956No Hit
TGCCATCTTGCCACATCTGTTGTGCTCATTACTGTCCCACAAAGGTCAGA1190.21935079537704374No Hit
AAGGTGGATGGTGATGTGGTCTACTTCGCAGTCAAGACCAAGTCTCTGCT1110.20460452341892316No Hit
TGCCATCTTGCCACATCTTAGGACGGTGGCCATGGAAGGGTATCCGCCAA1040.19170153545556765No Hit
GAGGACATCTTATGGGGCAAACTGAGGTACAGTCAAGACCAAGTCTCTGC730.13455973161785034No Hit
TGCCATCTTGCCACATCTTGAACACGATTGTGGGAAGGGTATCCGCCAAC730.13455973161785034No Hit
TGCCATCTTGCCACATCTTCCGGAAGGGTATCCGCCAACCAGTCAAGACC680.125343311644025No Hit
TGCCATCTTGCCACATCTGATCTGAGGTCGCGAAGGGTATCCGCCAACCA570.1050671877016092No Hit
TTCTGCAGTTGGCTGAATAGTTGATATATTGAGAGAATCTGGATGATATT570.1050671877016092No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)