FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008154417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008154417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35056
Total Bases5 Mbp
Sequences flagged as poor quality0
Sequence length141-145
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCCATCTTGCCACATCTTAGAAGTTTAGTTGAAATCATTGAACATGGTC1212234.57895937927887No Hit
TGCCCTCTCTGCCTTTTCTCCCCCAGGGTATTTGGTTTCCCAGTCCACTA942826.89411227749886No Hit
TTCTGCAGTTTGGCTGAATAGTTGATATATTGAGAGAATCTGGATGATAT670919.137950707439526No Hit
AAGGTGGATGGTGATGTGGTCTTCAATTTAGCCACCTGCTTCCGGGCTGA10272.929598356914651No Hit
GAGGACATCTTATGGTGCACTGAAATGGAAAGGGTATTTGGTTTCCCAGT7942.2649475125513465No Hit
GAGGACATCTTATGGGGGCAAACTGAGGTACAGTCAAGACCAAGTCTCTG2850.8129849383842993No Hit
GAGGACATCTTATGGTGCACTGAAATGGAAGGGTATCCGCCAACCAGTCA1930.5505476951163852No Hit
TGCCATCTTGCCACATCTTGCACCCCAATGCGGACCAGCCGCCGCAGCAG1760.5020538566864445No Hit
GAGGACATCTTATGGTGGCAAACTGAGGTACAGTCAAGACCAAGTCTCTG1760.5020538566864445No Hit
TGCATCTTGCCACATCTTAGAAGTTTAGTTGAAATCATTGAACATGGTCT1350.38509812870835236No Hit
TGCCATCTTGCCACATCTAGCACCCCAATGCGGACCAGCCGCCGCAGCAG1040.29666818804198997No Hit
TGCCATCTTGCACATCTTAGAAGTTTAGTTGAAATCATTGAACATGGTCT890.25387950707439527No Hit
TGCCTCTTGCCACATCTTAGAAGTTTAGTTGAAATCATTGAACATGGTCT570.16259698767685987No Hit
TTCTGCAGTTGGCTGAATAGTTGATATATTGAGAGAATCTGGATGATATT550.15689183021451392No Hit
AAGGTGGATGGTGATGTGGTCTACTTCGCAGTCAAGACCAAGTCTCTGCT550.15689183021451392No Hit
GAGGACATCTTATGGTGCAAACTGAGGTACAGTCAAGACCAAGTCTCTGC530.15118667275216796No Hit
TGCCATCTGCCACATCTTAGAAGTTTAGTTGAAATCATTGAACATGGTCT470.1340712003651301No Hit
TGCCATCTTGCCACATCTCCTAAACCCCTGCCCTCGCCTAAGCCTTCTGC460.1312186216339571No Hit
TGCCATTTGCCACATCTTAGAAGTTTAGTTGAAATCATTGAACATGGTCT430.12266088544043816No Hit
TGCCATCTTGCCACATCTTAGATAGAAGGAAAGCTCAGAATAAGTTAATC410.1169557279780922No Hit
TGCCATCTTGCCACATCTTGGAAGTTTAGTTGAAATCATTGAACATGGTC370.10554541305340029No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)