FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008154458

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008154458
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34670
Total Bases5 Mbp
Sequences flagged as poor quality0
Sequence length142-145
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGGCGGATACCCTTCCATAAAGGCTTTAACACAGAATCAAAAGATTCG1641847.355062013267954No Hit
GTGTCGCTACCTCAGTTTGCCCCCATGTCCCTTACACACACGCAAAATAC891425.710989327949235No Hit
CGAAGTAGACCAGCGGCATCTCGGCCCCACCCTGGACCTTAGCTCAGCAC26677.692529564464954No Hit
TTGGCGGATACCCTTCCATAAAGGCTTTAACACAGAATCAAAAGATTCGA2850.8220363426593597No Hit
GTTGGCGATACCCTTCCATAAAGGCTTTAACACAGAATCAAAAGATTCGA2650.7643495817709836No Hit
GTTGGCGGATACCCTTCTCTACAAAAAATACAAAAATCAGCCAGGTGTGG2320.669166426305163No Hit
GTTGCGGATACCCTTCCATAAAGGCTTTAACACAGAATCAAAAGATTCGA2300.6633977502163254No Hit
GTTGGCGGTACCCTTCCATAAAGGCTTTAACACAGAATCAAAAGATTCGA1730.4989904816844535No Hit
GTTGGCGGATACCCTTCCATTCAGAGTCCAATAACCCTGAGTTATCTTTC1410.4066916642630516No Hit
GTGGCGGATACCCTTCCATAAAGGCTTTAACACAGAATCAAAAGATTCGA1330.38361695990770117No Hit
GTTGGCGGATACCTTCCATAAAGGCTTTAACACAGAATCAAAAGATTCGA1270.36631093164118833No Hit
GTTGGCGGATACCCTTCATTGCGCCACGGCGGCTTTCGTGCGAGCCCCCG1220.35188924141909433No Hit
GTTGGGGATACCCTTCCATAAAGGCTTTAACACAGAATCAAAAGATTCGA1170.3374675511970003No Hit
GTTGGCGGATCCCTTCCATAAAGGCTTTAACACAGAATCAAAAGATTCGA1060.30573983270839344No Hit
GTTGGCGGATACCCTTCAATTCAGAGTCCAATAACCCTGAGTTATCTTTC950.27401211421978655No Hit
TACCTCAGTTTGCCCCCATAAGATGTCCTCTTGCCATGTAGAACCATGTC910.26247476204211134No Hit
GTTGGCGGAACCCTTCCATAAAGGCTTTAACACAGAATCAAAAGATTCGA700.2019036631093164No Hit
CGAAGTAGACAGCGGCATCTCGGCCCCACCCTGGACCTTAGCTCAGCACT610.17594462070954717No Hit
GTTGGCGGATACCCTTCCCTTTGATAATGATCAGAAATGTGAAGGAGGTA550.15863859244303433No Hit
TACCTCAGTTTGCCACCATAAGATGTCCTCTTGCCATGTAGAACCATGTC530.15286991635419672No Hit
GTTGGCGGATACCCTTCACTTTGATAATGATCAGAAATGTGAAGGAGGTA500.1442169022209403No Hit
GTTGGCGGATACCCTTCCATAAAGGCTTTAACACAGAATCAAAGGATTCG450.12979521199884628No Hit
TACCTCAGTTTGCCCCTTTCCCCTTTTTTGGCGTCCTAGTAAGATGTGGC440.12691087395442746No Hit
GTTGGCGGATACCCTTCTCAGCAAACACCTTGACAGTGCATGCCCCCCGG390.11248918373233342No Hit
GTTGGCGGATACCCTTCCTTGCGCCACGGCGGCTTTCGTGCGAGCCCCCG360.103836169599077No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)