FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008154525

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008154525
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28735
Total Bases4.1 Mbp
Sequences flagged as poor quality0
Sequence length141-145
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCCATCTTGCCACATCTTAGAAGTTTAGTTGAAATCATTGAACATGGTC846629.462328171219767No Hit
TGCCCTCTCTGCCTTTTCTCCCCCAGGGTATTTGGTTTCCCAGTCCACTA747125.999651992343832No Hit
TTCTGCAGTTTGGCTGAATAGTTGATATATTGAGAGAATCTGGATGATAT484016.843570558552287No Hit
AAGGTGGATGGTGATGTGGTCTTCAATTTAGCCACCTGCTTCCGGGCTGA339511.814859926918391No Hit
TGCCATCTTGCCACATCTTAGAAGTTTTGTTGAAATCATTGAACATGGTC5551.931442491734818No Hit
GAGGACATCTTATGGGGGCAAACTGAGGTACAGTCAAGACCAAGTCTCTG1450.5046111014442318No Hit
TGCATCTTGCCACATCTTAGAAGTTTAGTTGAAATCATTGAACATGGTCT1220.42456934052549156No Hit
AGGTGGATGGTGATGTGGTCTTCAATTTAGCCACCTGCTTCCGGGCTGAT730.25404558900295804No Hit
GAGGACATCTTATGGTGGCAAACTGAGGTACAGTCAAGACCAAGTCTCTG730.25404558900295804No Hit
TGCCATCTTGCCACATCTTACTAGGACGCCAAAAAAGGGGAAGGGGGCAA640.22272489994779884No Hit
TGCCATCTTGCCACATCTTACTAGGACGTCAAAAAAGGGGGGCAAACTGA540.18792413433095528No Hit
TGCCATCTTGCACATCTTAGAAGTTTAGTTGAAATCATTGAACATGGTCT530.18444405776927092No Hit
TTCTGCAGTTGGCTGAATAGTTGATATATTGAGAGAATCTGGATGATATT470.1635635983991648No Hit
TGCCATCTTGCCACATCTTACTAGGACGCCAAAAAAGGGGAAAGGGGCAA470.1635635983991648No Hit
AAGGTGGATGTGATGTGGTCTTCAATTTAGCCACCTGCTTCCGGGCTGAT450.15660344527579606No Hit
TGCCATCTGCCACATCTTAGAAGTTTAGTTGAAATCATTGAACATGGTCT450.15660344527579606No Hit
TGCCTCTTGCCACATCTTAGAAGTTTAGTTGAAATCATTGAACATGGTCT420.146163215590743No Hit
AAGGTGATGGTGATGTGGTCTTCAATTTAGCCACCTGCTTCCGGGCTGAT410.14268313902905866No Hit
TGCCATCTTGCCACATCTTACTAGGACGCCAAAAAAGGGAAAAGGGGGCA400.1392030624673743No Hit
TGCCATCTTGCCACATCTTACTAGGAACGCCAAAAAAGGGGGCAAACTGA370.1287628327823212No Hit
TGCCATCTTGCCACATCTTACTAGGACGCCAAAAAAGGGGGCAAACTGAG360.12528275622063684No Hit
TGCCATCTTCCACATCTTAGAAGTTTAGTTGAAATCATTGAACATGGTCT320.11136244997389942No Hit
TGCCATCTTGCCACATCTTACTAGGACGCCAAAAAAGGGGGGGCAAACTG320.11136244997389942No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)