FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008154671

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008154671
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences833
Total Bases120.7 kbp
Sequences flagged as poor quality0
Sequence length143-145
%GC58

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGGACATCTTATGGGGGCAAACTGAGGTACAGTCAAGACCAAGTCTCTG22126.53061224489796No Hit
GAGGACATCTTATGGTGGCAAACTGAGGTACAGTCAAGACCAAGTCTCTG13616.3265306122449No Hit
TGCCATCTTGCCACATCTTACTAGGACGCCAAAAAAGGGGAAAGGGGGCA425.042016806722689No Hit
TGCCATCTTGCCACATCTTACTAGGACGCCAAAAAAGGGGAAAGAGGGCA404.8019207683073235No Hit
GAGGACATCTTATGGTGCAAACTGAGGTACAGTCAAGACCAAGTCTCTGC404.8019207683073235No Hit
AAGGTGGATGGTGATGTGGTCTACTTCGCAGTCAAGACCAAGTCTCTGCT364.321728691476591No Hit
GAGGACATCTTATGGGGCAAACTGAGGTACAGTCAAGACCAAGTCTCTGC253.0012004801920766No Hit
AAGGTGGATGCCGCTGGTCTACTTCGCAGTCAAGACCAAGTCTCTGCTAC192.2809123649459786No Hit
TGCCATCTTGCCACATCTTACTGTATGGAAGGGTATCCGCCAACCAGTCA91.0804321728691477No Hit
TGCCATCTTGCCACATCTTACTAGGACGCCAAAAAGGGGAAAGGGGCAAA80.9603841536614646No Hit
AAGGTGGATGGTGATGCCGCTGGTCTACTTCGCAGTCAAGACCAAGTCTC80.9603841536614646No Hit
TGCCATCTTGCCACATCTTAGGGTATCCGCCAACCAGTCAAGACCAAGTC70.8403361344537815No Hit
TGCCATCTTGCCACATCTTGGTATCCGCCAACACAGAAGGGTATCCGCCA60.7202881152460985No Hit
TGCCATCTTGCCACATCTTAGTATCCGCCAACACAGAAGGGTATCCGCCA60.7202881152460985No Hit
GAGGACATCTCATGGGGGCAAACTGAGGTACAGTCAAGACCAAGTCTCTG60.7202881152460985No Hit
TGCCATCTTGCCACATCAAGGGTATCCGCCAACCAGTCAAGACCAAGTCT50.6002400960384154No Hit
TGCCATCTTGCCACATCTTACTAGGACGCCAAAAAAGGGGAAGGGGCAAA50.6002400960384154No Hit
GAGGACATCTTATGGTGGGCAAACTGAGGTACAGTCAAGACCAAGTCTCT50.6002400960384154No Hit
AAGGTGGATGGTGATGTCGCTGGTCTACTTCGCAGTCAAGACCAAGTCTC50.6002400960384154No Hit
TGCCATCTTGCCACATCTTACTAGGACGCCAAAAAAGGGGGCAAACTGAG50.6002400960384154No Hit
TGCCATCTTGCCACATCTCACTGTATGGAAGGGTATCCGCCAACCAGTCA40.4801920768307323No Hit
TGCCATCTTGCCACATCTTGAGGGTATCCGCCAACCAGTCAAGACCAAGT40.4801920768307323No Hit
TGCCATCTTGCCACATCTGTTGAAGATGGAAGGGTATCCGCCAACCAGTC40.4801920768307323No Hit
TGCCATCTTGCCACATCTTAGGTATCCGCCAACACAGAAGGGTATCCGCC40.4801920768307323No Hit
GAGGACATCTTATGGGGGGCAAACTGAGGTACAGTCAAGACCAAGTCTCT40.4801920768307323No Hit
TGCCATCTTGCCACATCTTGGTATCCGCCAACCAGTCAAGACCAAGTCTC40.4801920768307323No Hit
AAGGTGGATGGTGATGTGGTCAAGCAGTGGTATCAACGCAGAGTACATGG40.4801920768307323Clontech Universal Primer Mix Long (96% over 27bp)
GAGGACATCTTATGGGGGCAAACTGAGTACAGTCAAGACCAAGTCTCTGC30.36014405762304924No Hit
TGCCATCTTGCCACATCTTACTAGGACGAAAGGGGCAAACTGAGGTACAG30.36014405762304924No Hit
TGCCATCTTGCCACATCTTAGTAGGACGCCAAAAAAGGGGAAAGGGGGCA30.36014405762304924No Hit
TGCCATCTTGCCACATCTGGGTATCCGCCAACACAGAAGGGTATCCGCCA30.36014405762304924No Hit
TGCCATCTTGCCACATCTCACTGTATGCAAGGGTATCCGCCAACCAGTCA30.36014405762304924No Hit
TGCCATCTTGCCACATCTTAGGTATCCGCCAACCAGTCAAGACCAAGTCT20.24009603841536614No Hit
TGCCATCTTGCCACATCTTAGCAGTGGTATCAACGCAGAGTACATGGGTA20.24009603841536614Clontech SMARTer II A Oligonucleotide (96% over 25bp)
TGCCATCTTGCCACATCTTACTGTATGCAAGGGTATCCGCCAACCAGTCA20.24009603841536614No Hit
GAGGACATCTTATGGGGGCAAACTAGGTACAGTCAAGACCAAGTCTCTGC20.24009603841536614No Hit
TGCCATCTTGCCACATCTAAGCAGTGGTATCAACGCAGAGTACATGGGTA20.24009603841536614Clontech SMARTer II A Oligonucleotide (100% over 25bp)
TGCCATCTTGCCACATCAAGGGTATCCGCCAACACAGAAGGGTATCCGCC20.24009603841536614No Hit
TGCCATCTTGCCACATCTGGAAGGGTATCCGCCAACCAGTCAAGACCAAG20.24009603841536614No Hit
AAGGTGGATGCCGCTGTCTACTTCGCAGTCAAGACCAAGTCTCTGCTACC20.24009603841536614No Hit
TGCCATCTTGCCACATCTGTACCAGCTGCTAAGCTGGCTCAGCAAGGGTA20.24009603841536614No Hit
GAGGACATCTTATGGGGGCAAACGAGGTACAGTCAAGACCAAGTCTCTGC20.24009603841536614No Hit
TGCCATCTTGCCACATCTTACTGTATGGAAGGGTATTCGCCAACCAGTCA20.24009603841536614No Hit
TGCCATCTTGCCACATCTTGGGTATCCGCCAACACAGAAGGGTATCCGCC20.24009603841536614No Hit
TGCCATCTTGCCACATCTTACTAGGACGCCAAAAAAAGGGGAAAGAGGGC20.24009603841536614No Hit
GAGGACATCTTGCCACATCTCACTGTATGGAAGGGTATCCGCCAACCAGT20.24009603841536614No Hit
TGCCATCTTGCCACATCTTGGGGGGGGAAGGGTATCCGCCAACCAGTCAA20.24009603841536614No Hit
TGCCATCTTGCCACATCTTACTAGGACGCCAAAAAAGGGGAAAGGGGCAA20.24009603841536614No Hit
TGCCATCTTGCCACATCTTACTAGGACGCCAAAAAGGGGAAGGGGCAAAC20.24009603841536614No Hit
TGCCATCTTGCCACATCTGGGGGTATCCGCCAACACAGAAGGGTATCCGC20.24009603841536614No Hit
TGCCATCTTGCCACATCTTACTGTATGCATGGGTATCCGCCAACACAGGG10.12004801920768307No Hit
TGCCATCTTGCCACATCTTAGTATCCGCCAACACAGCGTATCCGCCAACA10.12004801920768307No Hit
TGCCATCTTGCCACATCTTGGTATCCGCCAACACAGCGGTATCCGCCAAC10.12004801920768307No Hit
TGCCATCTTGCCACATCTTACTAGGACGCCAAAGGGGCAAACTGAGGTAC10.12004801920768307No Hit
TGCCATCTTGCCACATCTTAGGGTATCCGCCAACACTTAAGGCAATCCGC10.12004801920768307No Hit
GAGGACATCTTATGGTGTAAACTGAGGTACAGTCAAGACCAAGTCTCTGC10.12004801920768307No Hit
TGCCATCTTGCCACATCAGGGTATCCGCCAACACAGAAGGGTATCCGCCA10.12004801920768307No Hit
TGCCTTCTTGCCACATCTTACTGTATACAAGGGTATCCGCCAACCAGTCA10.12004801920768307No Hit
AAGTGGATGGTGATGTGGTCTACTTCGCAGTCAAGACCAAGTCTCTGCTA10.12004801920768307No Hit
TGCCATCTTGCCACATCTTGGGGTATCCGCCAACACAGAAGGGTATCCTC10.12004801920768307No Hit
AAGGTGGATGGTGATGCCGCTGGTCTATTCGCAGTCAAGACCAAGTCTCT10.12004801920768307No Hit
GAGGACATCTTATGGTGGCAAACCGAGGTACAGTCAAGACCAAGTCTCTG10.12004801920768307No Hit
TGCCATCTTGCCACATCTGGGGGGGCAAACTGAGGTACAGTCAAGACCAA10.12004801920768307No Hit
GAGGACATCTTATGGTGGCAAACTGAGGACAGTCAAGACCAAGTCTCTGC10.12004801920768307No Hit
GAGGACATCTTGCCACATCTGTACCAGCTGCTAAGCTGGCTCAGCAAGGG10.12004801920768307No Hit
GAGGACATCTTATGGTGGCAAATGAGGTACAGTCAAGACCAAGTCTCTGC10.12004801920768307No Hit
TGCCATCTTGCCACATCTTGGGTATCCGCCAACCAGTCAAGACCAAGTCT10.12004801920768307No Hit
TGCCATCTTGCCACATCTTAGTACCAAAAAAGGGGAAAGAGGGCAAACTG10.12004801920768307No Hit
TGCCATCTTGCACATCTTAGTAGGACGCCAAAAAAGGGGAAAGGGGGCAA10.12004801920768307No Hit
GAGGACATCTTATGGGGGCAAACTGAGGTTCAGTCAAGACCAAGTCTCTG10.12004801920768307No Hit
TGCCATCTTGCCACATCTTACTAGGACGCCAAAAAAGGGCAATGGCGGCA10.12004801920768307No Hit
GAGGACATCTTGCCACATCTTAGGGTATCCGCCAACCAGTCAAGACCAAG10.12004801920768307No Hit
TGCATCTTGCCACATCTTACTAGGACGCCAAAAAAGGGGAAAGGGGGCAA10.12004801920768307No Hit
TGCCATCTTGCCACATCTTATGGGGCAAACTGAGGTACAGTCAAGACCAA10.12004801920768307No Hit
AAGGTGGATGGTGACGTGGTCTACTTCGCAGTCAAGACCAAGTCTCTGCT10.12004801920768307No Hit
TGCCATCTTGCCACATCTTGGTATCAGCCAACACAGAAGGGTATCCTCCA10.12004801920768307No Hit
GAGGACATCTTATGGGGGCAACTAGGTACAGTCAAGACCAAGTCTCTGCT10.12004801920768307No Hit
TGCCATCTTGCCACATCTTACTAGGACGCCAAAAGGGGAAAGGGGCAAAC10.12004801920768307No Hit
GAGGACATCTTATGGTGCATGGGGGCAAACTGAGGTACAGTCAAGACCAA10.12004801920768307No Hit
AAGGTGGATGGTGCCGCTGGTCTACTTCGCAGTCAAGACCAAGTCTCTGC10.12004801920768307No Hit
GAGGACATCCTATGGGGGCAAACTGAGGTACAGTCAAGACCAAGTCTCTG10.12004801920768307No Hit
TGCCATCTTGCCACATCTTTTCCCACTTAACCATGACTTTGGGACCTTAG10.12004801920768307No Hit
TGCCATCTTGCCACATCTCATGGGGGCAAACTGAGGTACAGTCAAGACCA10.12004801920768307No Hit
TGCCATCTTGCCACATCTTACTAGGACGCCAAAAAAGGGGAAGGGGGCAA10.12004801920768307No Hit
TGCCATCTTGCCACATCTGTTGAAGATGGAAGGGTATCCGCCAACAGTCA10.12004801920768307No Hit
TGCCATCTTGCCACATCTTACTAGGACGACAAAAAAGGTGAAAGAGCGCA10.12004801920768307No Hit
TGCCATCTTGCCACATCTGAAGGGTATCCGCCAACACAGAAGGGTATCCG10.12004801920768307No Hit
TGCCATCTTGCCACATCTTACTGTATGGATGGGTATCCGCCAACCAGTCA10.12004801920768307No Hit
GAGGACATCTTATGGTGCACTGAGGTACAGTCAAGACCAAGTCTCTGCTA10.12004801920768307No Hit
TGCCATCTTGCCACATCTGGGGGTATCCGCCAACACAGCAGGGTCACCCC10.12004801920768307No Hit
AAGGTGGATGGGATGTGGTCTACTTCGCAGTCAAGACCAAGTCTCTGCTA10.12004801920768307No Hit
GAGGACATCTTATGGGGCAAACTGAGGTACAGTCAAGACCAATCTCTGCT10.12004801920768307No Hit
TGCCATCTTGCCACATCTTATGGGGGCAAACTGAGGTACAGTCAAGACCA10.12004801920768307No Hit
GAGGACATCTTGTGGTGCAAACTGAGGTACAGTCAAGACCAAGTCTCTGC10.12004801920768307No Hit
TGCCCTCTCTGCCTTTTCTCAAGCAGTGGTATCAACGCAGAGTACATGGG10.12004801920768307Clontech SMARTer II A Oligonucleotide (100% over 25bp)
TGCCATCTTGCCACATCTTGGGTATCCGCCAACACAGACAAAGGGTATCC10.12004801920768307No Hit
GAGACATCTTATGGGGGCAAACTGAGGTACAGTCAAGACCAAGTCTCTGC10.12004801920768307No Hit
AGGTGGATGCCGCTGGTCTACTTCGCAGTCAAGACCAAGTCTCTGCTACC10.12004801920768307No Hit
TGCCATCTTGCCACATCTCCAAGGGGTATCCGCCAACCAGTCAAGACCAA10.12004801920768307No Hit
GAGGACATCTTATGGGGGAAACTGAGGTACAGTCAAGACCAAGTCTCTGC10.12004801920768307No Hit
TGCCATCTTGCCACATCTTACTAGGAACGCCAAAAAAGGGGAAAGGGGGC10.12004801920768307No Hit
TGCCATCTTGCCACATCTTACTAGGACGAAGGGGGCAAACTGAGGTACAG10.12004801920768307No Hit
TGCCATCTTGCCACATCTTACTAGGACGCCAAAAAGGGGAAAGAGGGCAA10.12004801920768307No Hit
GAGGACATCTTATGGGGGCAAACTGAGGAACAGTCAAGACCAAGTCTCTG10.12004801920768307No Hit
TGCCATCTTGCCACATCTGGGTATCCGCCAACACAGGGGTATCCGCCAAC10.12004801920768307No Hit
TGCCATCTTGCCACATCTTGGTATCCGCCAACACAGCGGTATCAGCGAAC10.12004801920768307No Hit
TGCCATCTTGCCACATCTTGGGGGGGGAAGGGTCCGCCAACCAGTCAAGA10.12004801920768307No Hit
TGCCATCTTGCCACATCTTACTAGGACGCCAAGAAAGGGGAAAGGGGGCA10.12004801920768307No Hit
GAGGACATCTTATGGTGCACTGAAATGGAAAGGGTATTTGGTTTCCCAGT10.12004801920768307No Hit
GAGGACACTTATGGGGGCAAACTGAGGTACAGTCAAGACCAAGTCTCTGC10.12004801920768307No Hit
AAGGTGGATGGTGATGTGGTCTACTTCCAGTCAAGACCAAGTCTCTGCTA10.12004801920768307No Hit
TGCCATCTTGCCACATCTGGGGGGTATCCGCCAACCAGTCAAGACCAAGT10.12004801920768307No Hit
TGCCATCTTGCCACATCTTAGAGGGTATCCGCCAACCAGTCAAGACCAAG10.12004801920768307No Hit
AAGGTGGATGGTGATGTGTCTACTTCGCAGTCAAGACCAAGTCTCTGCTA10.12004801920768307No Hit
GAGGACATCTTATGGGCAAACTGAGGTACAGTCAAGACCAAGTCTCTGCT10.12004801920768307No Hit
TGCATCTTGCCACATCTGTTGAAGATGGAAGGGTATCCGCCAACCAGTCA10.12004801920768307No Hit
TGCCATCTTGCCACATCTTGGGTATCCGCCGACCAGTCAAGACCAAGTCT10.12004801920768307No Hit
TGCCATCTTGCCACATCTGGGGGGTATCCGCCAACACAGAAGGGTATCCG10.12004801920768307No Hit
AAGGTGGATGGTGATGTGGTGGTGGATGCCGCTGGTCTACTTCGCAGTCA10.12004801920768307No Hit
TGCCATCTTGCCACATCTTACTAGGACGCCAAAAAAAGGGGAAAGGGGGC10.12004801920768307No Hit
TGCCATCTTGCCACATCAGGGTATCCGCCAACCAGTCAAGACCAAGTCTC10.12004801920768307No Hit
GAGGACATCTTAGGTGCACTGAGGTACAGTCAAGACCAAGTCTCTGCTAC10.12004801920768307No Hit
TGCCATCTTGCCACATCTTACTAGGACGCCAAAAAAGGGGAAAGAGGACA10.12004801920768307No Hit
TGCCATCTTTCCAAATATTGGGTATCCGAAAAAACATAAGGGGATCAGAA10.12004801920768307No Hit
TGCCATCTTGCCACATCTTACTAGGACGCCAAAAAAGGGGAATGGGGGCA10.12004801920768307No Hit
TGCCATCTTGACACATCTTACTAGGACGCCAAAAAAGGGGAAAGAGGGCA10.12004801920768307No Hit
TGCCATCTTGCCACATCTTACTGTATGCAAGGGTATCGCCAACCAGTCAA10.12004801920768307No Hit
AAGGTGGATGTGATGTGGTCTACTTCGCAGTCAAGACCAAGTCTCTGCTA10.12004801920768307No Hit
GAGGACATCTTATGGTGCAAACTGAGGTACAGTCAATACAAAGTCTCTGC10.12004801920768307No Hit
TGCCATCTTGCCACATCTTAGCAGGGGTATCCGCCAACACAGAAGGGTAT10.12004801920768307No Hit
TGCCATCTTGCCACATCTTGGTATCAACGCAGAGTACATGGGTATCCGCC10.12004801920768307No Hit
GAGGACATCTTATGGTGGGGGCAAACTGAGGTACAGTCAAGACCAAGTCT10.12004801920768307No Hit
TGCCATCTTGCCACATTTTACTAGGACGCCAAAAAGGGGAAGGGGCAAAC10.12004801920768307No Hit
GAGGACATCTTGCCAATCTTACTAGGACGCCAAAAAAGGGGAAAGGGGGC10.12004801920768307No Hit
TGCCATCTTGCCACATCTGGGAGGGTATCCGCCAACCAGTCAAGACCAAG10.12004801920768307No Hit
TGCCATCTTGCCACATCTTAGGGTATCCGCCAACACAGAAGGGTATCCGC10.12004801920768307No Hit
GAGGACATCTTATGGTGCAAACTGAGTTACAGTCAAGACCAAGTCTCTGC10.12004801920768307No Hit
TGCCCTCTCTGCCTTTTCAAGCAGTGGTATCAACGCAGAGTACATGGGTA10.12004801920768307Clontech SMARTer II A Oligonucleotide (100% over 25bp)
AAGGTGGTGGTGATGTGGTCTACTTCGCAGTCAAGACCAAGTCTCTGCTA10.12004801920768307No Hit
TGCCATCTTGCCACATCTGGGGGTATCCGCCAACCAGTCAAGACCAAGTC10.12004801920768307No Hit
GAGGACATCTTATGGTGGGGCAAACTGAGGTACAGTCAAGACCAAGTCTC10.12004801920768307No Hit
TGCCATCTTGCCACATCTGGGTATCCGCCAACCAGTCAAGACCAAGTCTC10.12004801920768307No Hit
GAGGACATCTTAGGGGGCAAACTGAGGTACAGTCAAGACCAAGTCTCTGC10.12004801920768307No Hit
TGCCATCTGCCACATCTTACTAGGACGCCAAAAAAGGGGAAAGGGGGCAA10.12004801920768307No Hit
AAGGTGGATGGTGATGTGGTGGATGCCGCTGGTCTACTTCGCAGTCAAGA10.12004801920768307No Hit
TGCCATCTTGCCACATCTTGGTATCCGCCAACACAGAAGGGTATCCGCAA10.12004801920768307No Hit
GAGGAGATCTTATGGGGGCAAACTGAGGTACAGTCAAGACCAAGTCTCTG10.12004801920768307No Hit
GAGGACATCTTATGGGGGCAAAGACCAGCATTTTCCATAACTCATGGAAG10.12004801920768307No Hit
TGCCATCTTGCCACATCTTGGAAGGGTATCCGCCAACCAGTCAAGACCAA10.12004801920768307No Hit
TGCCATCTTGCCACATCTTAGCAGGGGTATCCGCCCACCAGTCAAGACCA10.12004801920768307No Hit
TGCCATCTTGCCACATCTTAGGTATCCGCCAACACAGCAAGGGTATCCGC10.12004801920768307No Hit
GAGGACATCTTGCCACATCTTACTGTATGGAAGGGTATCCGCCAACACAG10.12004801920768307No Hit
TGCCATCTTGCCACATCTTACTAGGACGCCAAAAAGGGGGCAAACTGAGG10.12004801920768307No Hit
GAGGACATCTTGCCACATCTGGGGTATCCGCCAACCAGTCAAGACCAAGT10.12004801920768307No Hit
GAGGACATCTCATGGGGGCAAATGAGGTACAGTCAAGACCAAGTCTCTGC10.12004801920768307No Hit
GAGGACATCTTATGTGCAATACTGAGGAACAGTCAATACGAATACACGTC10.12004801920768307No Hit
GAGGACATCTTATGGTGGCAAACTGAGGTACAGTCAAGACCAATCTCTGC10.12004801920768307No Hit
TGCCATCTTGCCACATCTGGGGGGGGTATCCGCCAACACAGAAGGGTATC10.12004801920768307No Hit
TGCCATCTTGCCACATCTGGGGTATCCGCCAACACAGAAGGGTATCCGCC10.12004801920768307No Hit
TGCCATCTTGCCACATCTAAGCAAGGGTATCCGCCAACCAGTCAAGACCA10.12004801920768307No Hit
GAGGACATCTTATGGGGGCAAATGAGGTACAGTCAAGACCAAGTCTCTGC10.12004801920768307No Hit
GAGGAATCTTATGGTGGCAACTGAGGTACAGTCAAGACCAAGTCTCTGCT10.12004801920768307No Hit
TGCCATCTTGCCACATCTGTTGAAGATGGAAGGGTATCCGCCACCCAGTC10.12004801920768307No Hit
TGCATCTTGCCACATCTTGGGGTATCCGCCAACCAGTCAAGACCAAGTCT10.12004801920768307No Hit
GAGGACATCTTATGGGGGAAAAATAAGGAAAAGTAAATACCAAGTCTATT10.12004801920768307No Hit
TGCCATCTTGCACATCTGTTGAAGATGGAAGGGTATCCGCCAACCAGTCA10.12004801920768307No Hit
TGCCATCTTGCACATCTTACTAGGACGCCAAAAAAGGGGAAAGGGGGCAA10.12004801920768307No Hit
TGCCATCTTGCCACATCTTACCAGCTGCTAAGCTGGCTCAGGAAGGGTAT10.12004801920768307No Hit
TGCCATCTTGCCACATCTGTTGAAGATGGAAGGGTATCGCCAACCAGTCA10.12004801920768307No Hit
GAGGCATCTTATGGGGGCAAACTGAGGTACAGTCAAGACCAAGTCTCTGC10.12004801920768307No Hit

[FAIL]Adapter Content

Adapter graph