FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008154766

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008154766
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71693648
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCTCGTATG4471960.6237595832757736TruSeq Adapter, Index 2 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCGCGTATG1775770.24768860973569096TruSeq Adapter, Index 2 (97% over 37bp)
GCGGGAAGTAGGTCTTGGTGGTGGGGAAGGACAGGAACATCCTCTCCAGGG1282160.1788387166461386No Hit
GGGAGGAGGGCCCGTTGGGAGGCCCAGCGGGCAGGAGGAACGGCTACCGAG887680.12381571098181529No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)