FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008154769

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008154769
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59008376
Sequences flagged as poor quality0
Sequence length51
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGTATG10009871.6963473117782464TruSeq Adapter, Index 3 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCGCGTATG1972400.33425763149285787TruSeq Adapter, Index 3 (97% over 36bp)
GCGGGAAGTAGGTCTTGGTGGTGGGGAAGGACAGGAACATCCTCTCCAGGG743700.12603295505031353No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)