FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008154886

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008154886
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66383820
Sequences flagged as poor quality0
Sequence length51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTATG3133750.47206533158230424TruSeq Adapter, Index 19 (97% over 38bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCGCGTATG812210.12235059687737161TruSeq Adapter, Index 19 (97% over 38bp)
GCGGGAAGTAGGTCTTGGTGGTGGGGAAGGACAGGAACATCCTCTCCAGGG737440.11108731013069148No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)