FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008154970

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008154970
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences77494175
Sequences flagged as poor quality0
Sequence length51
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCTCGTATG1685500.21750021856481472TruSeq Adapter, Index 6 (97% over 36bp)
GTACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACGTAGAACTCAATC974500.1257513871203868No Hit
AGTATGGCCCGGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACCC801730.10345680820526189No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCCATCTGCCCTACGTTTGA781940.1009030678757468No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)