FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008155127

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008155127
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66304690
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCTCGTATG4698320.7085954251501666TruSeq Adapter, Index 6 (97% over 36bp)
GCACCATCAGTGTTGATATCCAACTCTTTGAACCAGACGTCTGCACCCTTT1702400.25675408481662454No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCGCGTATG1110960.1675537582635557TruSeq Adapter, Index 6 (97% over 36bp)
GTGGCTTTCTTCATGGCTTTTTTTGTGGGCTGCCACGCCCATCTTTATCAC704880.10630922186650749No Hit
CTCCCCGAGGCCTGGCTTATGGTGGTGGCCAGGGCCCTCGTCACCCTCGTG686020.10346477752931203No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)