FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008155137

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008155137
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70095312
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCGATAGATCTCGTATG8595641.2262788701190175TruSeq Adapter, Index 1 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCGATAGATCGCGTATG1597250.22786830594319915TruSeq Adapter, Index 1 (97% over 36bp)
GTACTGGATGCATCTGCAGGATATCGCGGCCGCTCGACGTAGAACTCAATC784450.11191190646244645No Hit
AGTATGGCCCGGGGGATCCTACGTTCCAAATGCAGCGAGCTCGTATAACCC751190.107166938639206No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)