FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008155266

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008155266
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88932730
Sequences flagged as poor quality0
Sequence length51
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCGATAGATCTCGTATG3204830.3603656381626877TruSeq Adapter, Index 1 (97% over 36bp)
CCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAG1313460.1476914067520473No Hit
CCCGAAGTTACGGATCCGGCTTGCCGACTTCCCTTACCTACATTGTTCCAA1160540.13049638755045526No Hit
GCCCCATTGGCTCCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCGG1093300.1229356166171892No Hit
CCCGGGGCTCCCGCCGGCTTCTCCGGGATCGGTCGCGTTACCGCACTGGAC1054260.11854578173862425No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCGATAGATCGCGTATG992050.1115506068463208TruSeq Adapter, Index 1 (97% over 36bp)
CCGGATAAAACTGCGTGGCGGGGGTGCGTCGGGTCTGCGAGAGCGCCAGCT977170.10987743207703171No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTAC923870.1038841380445647No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)