FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008155267

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008155267
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62299048
Sequences flagged as poor quality0
Sequence length51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTATG4039370.6483839046786076TruSeq Adapter, Index 19 (97% over 38bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCGCGTATG1361140.21848487957632995TruSeq Adapter, Index 19 (97% over 38bp)
CCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAG670560.10763567366230059No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)