FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008155318

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008155318
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72903791
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAGATCTTTTCGCACCAGCTCTTTGAATTCCCCCTGGTTCAGGGTGTCTG1334610.1830645542150202No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTCAGAAATCTCGTATG1109110.15213337808454983TruSeq Adapter, Index 13 (97% over 38bp)
GTCCAGGTCCTCCATGATGTGTTCTATGACCTTTTCATTCTTATTCTCCTT953080.13073119887551526No Hit
CCCTCGTGCATCTTCTCGTGGGAGGCCCAGGTTAGCCTCGCCATCAGCATG913660.12532407265350576No Hit
CTCCCCGAGGCCTGGCTTATGGTGGTGGCCAGGGCCCTCGTCACCCTCGTG911680.12505248183870163No Hit
CCCTCCCCGAGGCCTGGCTTATGGTGGTGGCCAGGGCCCTCGTCACCCTCG848360.11636706244809683No Hit
GCACCATCAGTGTTGATATCCAACTCTTTGAACCAGACGTCTGCACCCTTT762640.10460910050617259No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)