FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008155340

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008155340
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60190422
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCTCGTATG5935760.9861635460871166TruSeq Adapter, Index 2 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCGCGTATG2285850.37976972482432503TruSeq Adapter, Index 2 (97% over 37bp)
CCCTGGTAGATGCAGGTTCCATAGCGACGTTCTCCTGCAATGCACGCTGGT625650.1039451094062773No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)