FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008155459

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008155459
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62436237
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGATTCCATCTCGTATG1081080.17314944845250685TruSeq Adapter, Index 7 (97% over 38bp)
GCACCATCAGTGTTGATATCCAACTCTTTGAACCAGACGTCTGCACCCTTT1032050.1652966369513909No Hit
GCAGATCTTTTCGCACCAGCTCTTTGAATTCCCCCTGGTTCAGGGTGTCTG1009900.16174901764179028No Hit
CTCCCCGAGGCCTGGCTTATGGTGGTGGCCAGGGCCCTCGTCACCCTCGTG843320.13506899847279394No Hit
CCCTCCCCGAGGCCTGGCTTATGGTGGTGGCCAGGGCCCTCGTCACCCTCG840740.13465577690084043No Hit
CCCTCGTGCATCTTCTCGTGGGAGGCCCAGGTTAGCCTCGCCATCAGCATG794610.12726743925967224No Hit
GTCCAGGTCCTCCATGATGTGTTCTATGACCTTTTCATTCTTATTCTCCTT762920.12219186111424364No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)