FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008155595

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008155595
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69589997
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCAGCATCTTCCACATTCACCTTGCCCCACAGGCTTGTGATAGTAGCCT1500580.2156315655538827No Hit
CCCAGGGTTTCTCCTCCAGCATCTTCCACATTCACCTTGCCCCACAGGCTT1326120.19056187055159665No Hit
CCCAGGAGCTTGAAGTTCTCAGGATCCACATGCAGCTTGTCACAGTGCAGT1293630.18589309610115373No Hit
CCCATGATGGCAGAGGCAGAGGACAGGTTGCCAAAGCTGTCAAAGAACCTC1286500.1848685235609365No Hit
CCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAG1158410.16646214254039987No Hit
CTCAGGATCCACATGCAGCTTGTCACAGTGCAGTTCACTCAGCTGGGCAAA1115140.16024429488048403No Hit
CCCGAAGTTACGGATCCGGCTTGCCGACTTCCCTTACCTACATTGTTCCAA1021710.14681851473567387No Hit
CCAGGAGCTTGAAGTTCTCAGGATCCACATGCAGCTTGTCACAGTGCAGTT969070.13925420919331266No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGGCTATGATCTCGTATG922330.1325377266505702TruSeq Adapter, Index 7 (97% over 36bp)
CCATGATGGCAGAGGCAGAGGACAGGTTGCCAAAGCTGTCAAAGAACCTCT874320.12563874661468946No Hit
CCAGGGTTTCTCCTCCAGCATCTTCCACATTCACCTTGCCCCACAGGCTTG869920.12500647183531277No Hit
GCCCCATTGGCTCCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCGG834330.11989223106303626No Hit
CTTGACTTTGGGGTTGCCCATGATGGCAGAGGCAGAGGACAGGTTGCCAAA818560.11762610077422479No Hit
CGGGCTTCTTACCCATTTAAAGTTTGAGAATAGGTTGAGATCGTTTCGGCC809070.11626239903416004No Hit
CCAGCATCTTCCACATTCACCTTGCCCCACAGGCTTGTGATAGTAGCCTTG808370.11616180986471375No Hit
CCTTGACTTTGGGGTTGCCCATGATGGCAGAGGCAGAGGACAGGTTGCCAA802010.11524788541088743No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTAC792320.11385544390812374No Hit
GCCGTATCGTTCCGCCTGGGCGGGATTCTGACTTAGAGGCGTTCAGTCATA790970.11366145050990589No Hit
CCGGATAAAACTGCGTGGCGGGGGTGCGTCGGGTCTGCGAGAGCGCCAGCT785160.11282656040350167No Hit
CCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGA782850.1124946161443289No Hit
GCCCATGATGGCAGAGGCAGAGGACAGGTTGCCAAAGCTGTCAAAGAACCT741850.10660296479104606No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)