FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008155640

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008155640
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80740003
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCTCGTATG2616840.32410699811343824TruSeq Adapter, Index 6 (97% over 36bp)
CCCTGGTAGATGCAGGTTCCATAGCGACGTTCTCCTGCAATGCACGCTGGT2336060.28933117577416984No Hit
GCCCAGAGTCTTCCCTGGTAGATGCAGGTTCCATAGCGACGTTCTCCTGCA1741710.2157183471989715No Hit
CCCAGAGTCTTCCCTGGTAGATGCAGGTTCCATAGCGACGTTCTCCTGCAA1678290.20786350478584947No Hit
CCAGAGTCTTCCCTGGTAGATGCAGGTTCCATAGCGACGTTCTCCTGCAAT1592750.19726900431252153No Hit
CTGGGATGTCCGCTGCAATCTGCTCCGGGGCTGCAGCAACCTCATCAGCTC1587980.1966782190979111No Hit
CCTGTAGCTCTCAAAGCAAATTTTGAGCTCATTTTTCTTTTTCTGCAAGCT1070790.13262199160433522No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCGCGTATG985310.1220349223915684TruSeq Adapter, Index 6 (97% over 36bp)
GCAGGTTCCATAGCGACGTTCTCCTGCAATGCACGCTGGTATTCTGCAATA880130.10900792262789488No Hit
GCGACGTTCTCCTGCAATGCACGCTGGTATTCTGCAATAGCAGGCCATGTT812750.1006626170177378No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)