FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008155660

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008155660
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67309573
Sequences flagged as poor quality0
Sequence length51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGATCTCGTATG2533830.3764442243601813TruSeq Adapter, Index 27 (97% over 39bp)
CCCTGGTAGATGCAGGTTCCATAGCGACGTTCTCCTGCAATGCACGCTGGT2525710.37523785806812354No Hit
GCCCAGAGTCTTCCCTGGTAGATGCAGGTTCCATAGCGACGTTCTCCTGCA1595110.23698114976899348No Hit
CCCAGAGTCTTCCCTGGTAGATGCAGGTTCCATAGCGACGTTCTCCTGCAA1407390.20909210046541224No Hit
GCGGGAAGTAGGTCTTGGTGGTGGGGAAGGACAGGAACATCCTCTCCAGGG1192610.17718282063682086No Hit
CCAGAGTCTTCCCTGGTAGATGCAGGTTCCATAGCGACGTTCTCCTGCAAT1060490.15755411195373353No Hit
CCTGTAGCTCTCAAAGCAAATTTTGAGCTCATTTTTCTTTTTCTGCAAGCT852700.12668331739379776No Hit
GGACAGCAAGAAAGCGAGCTTAGTGATACTTGTGGGCCAGGGCATTAGCCA758700.11271799332317856No Hit
CTGGGATGTCCGCTGCAATCTGCTCCGGGGCTGCAGCAACCTCATCAGCTC714130.1060963497718222No Hit
GGGAGGAGGGCCCGTTGGGAGGCCCAGCGGGCAGGAGGAACGGCTACCGAG697350.10360339085793933No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)