FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008155722

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008155722
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66465295
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAG942420.14179129122950557No Hit
CCCGAAGTTACGGATCCGGCTTGCCGACTTCCCTTACCTACATTGTTCCAA871300.13109097010703105No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTATG734790.11055243191202266TruSeq Adapter, Index 19 (97% over 38bp)
GCCCCATTGGCTCCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCGG672270.10114601913675399No Hit
CGGGCTTCTTACCCATTTAAAGTTTGAGAATAGGTTGAGATCGTTTCGGCC671090.10096848287516065No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)