FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008155735

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008155735
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58230094
Sequences flagged as poor quality0
Sequence length51
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATTCGTATCTCGTATG2481600.4261713882859265TruSeq Adapter, Index 7 (97% over 35bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATTCGTATCGCGTATG636490.10930602310207502TruSeq Adapter, Index 7 (97% over 35bp)
CCCTGGTAGATGCAGGTTCCATAGCGACGTTCTCCTGCAATGCACGCTGGT630120.10821208703527081No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)