FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008155756

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008155756
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56157811
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCTCGCGCATCTCGTATG1005040.17896708972506067TruSeq Adapter, Index 8 (97% over 36bp)
CCCTGGTAGATGCAGGTTCCATAGCGACGTTCTCCTGCAATGCACGCTGGT801060.142644448872838No Hit
GCAGATCTTTTCGCACCAGCTCTTTGAATTCCCCCTGGTTCAGGGTGTCTG619560.11032481305227512No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)