FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008155763

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008155763
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69978767
Sequences flagged as poor quality0
Sequence length51
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCGATAGATCTCGTATG6960020.9945902590710123TruSeq Adapter, Index 1 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCGATAGATCGCGTATG1883760.26919022451481606TruSeq Adapter, Index 1 (97% over 36bp)
CCCTCGTGCATCTTCTCGTGGGAGGCCCAGGTTAGCCTCGCCATCAGCATG985610.14084415062643216No Hit
GCACCATCAGTGTTGATATCCAACTCTTTGAACCAGACGTCTGCACCCTTT944630.13498808860121814No Hit
CCCTCCCCGAGGCCTGGCTTATGGTGGTGGCCAGGGCCCTCGTCACCCTCG878190.12549378013476573No Hit
CTCCCCGAGGCCTGGCTTATGGTGGTGGCCAGGGCCCTCGTCACCCTCGTG796370.11380166215274985No Hit
CTCCTGATTAGTGGCTGTGGCCGTGGCCACCATGACTGTGGCCGTGGCCGT782360.11179962630664814No Hit
GCAGATCTTTTCGCACCAGCTCTTTGAATTCCCCCTGGTTCAGGGTGTCTG721060.103039826351899No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)