FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008156271

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008156271
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1764385
Total Bases309.3 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTAGAGCTTGTCTCAATGGATCTAGAACTTCATCGCCCTCTGATCGCC20010.113410621831403No Hit
CTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCA19920.11290052907953763No Hit
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG19520.11063345018235816No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)