FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008157252

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008157252
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65574447
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCTCGTATG2176620.3319311255495605TruSeq Adapter, Index 2 (97% over 37bp)
GCGGGAAGTAGGTCTTGGTGGTGGGGAAGGACAGGAACATCCTCTCCAGGG1228630.18736414201098792No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCGCGTATG911840.13905416541293897TruSeq Adapter, Index 2 (97% over 37bp)
GGGGAGGAGGGCCCGTTGGGAGGCCCAGCGGGCAGGAGGAACGGCTACCGA675120.10295473784170837No Hit
GGGAGGAGGGCCCGTTGGGAGGCCCAGCGGGCAGGAGGAACGGCTACCGAG664010.10126048032093964No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)