FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008157290

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008157290
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73334654
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATTCGTATCTCGTATG1960310.26731018598655965TruSeq Adapter, Index 7 (97% over 35bp)
GCGGGAAGTAGGTCTTGGTGGTGGGGAAGGACAGGAACATCCTCTCCAGGG1358450.18523984581695851No Hit
GGACAGCAAGAAAGCGAGCTTAGTGATACTTGTGGGCCAGGGCATTAGCCA820320.11185980368844449No Hit
GGGCATGTCGTCCACGTGCGCCACGGCGTTGGTCAGCGCGTCGGCCACCTT788410.10750851841477291No Hit
GGGAGGAGGGCCCGTTGGGAGGCCCAGCGGGCAGGAGGAACGGCTACCGAG738310.10067682326557374No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)