FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008157347

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008157347
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59953160
Sequences flagged as poor quality0
Sequence length51
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCTCGTATG5783710.9647047795312207TruSeq Adapter, Index 6 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGCGAAATCGCGTATG1815750.30286143382600683TruSeq Adapter, Index 6 (97% over 36bp)
GCGGGAAGTAGGTCTTGGTGGTGGGGAAGGACAGGAACATCCTCTCCAGGG621560.10367426837884774No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)