FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008157414

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008157414
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54431513
Sequences flagged as poor quality0
Sequence length51
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGATTCCATCTCGTATG2265840.41627356564569495TruSeq Adapter, Index 7 (97% over 38bp)
GCGGGAAGTAGGTCTTGGTGGTGGGGAAGGACAGGAACATCCTCTCCAGGG1096050.20136313315413443No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGATTCCATCGCGTATG692680.12725716442973026TruSeq Adapter, Index 7 (97% over 38bp)
GGGAGGAGGGCCCGTTGGGAGGCCCAGCGGGCAGGAGGAACGGCTACCGAG642570.11805110028817314No Hit
GGGGAGGAGGGCCCGTTGGGAGGCCCAGCGGGCAGGAGGAACGGCTACCGA551640.10134570391236415No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)