FastQCFastQC Report
Thu 31 Aug 2023
EGAF00008157529

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008157529
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74222462
Sequences flagged as poor quality0
Sequence length51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTGGTAGATGCAGGTTCCATAGCGACGTTCTCCTGCAATGCACGCTGGT1420710.19141240558686937No Hit
CCCAGAGTCTTCCCTGGTAGATGCAGGTTCCATAGCGACGTTCTCCTGCAA1174810.1582822730940938No Hit
GCCCAGAGTCTTCCCTGGTAGATGCAGGTTCCATAGCGACGTTCTCCTGCA1041550.14032813947885478No Hit
CCAGAGTCTTCCCTGGTAGATGCAGGTTCCATAGCGACGTTCTCCTGCAAT1009440.13600195584996896No Hit
CTGGGATGTCCGCTGCAATCTGCTCCGGGGCTGCAGCAACCTCATCAGCTC827080.11143257414446855No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)