FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008157622

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008157622
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences293935
Total Bases42.8 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCCCGCCCCTTGCCTCTCGGCGCCCCCTCGATGCTCTTAGCTGAGTGTC6580.22385901644921494No Hit
CCCCTTGCCTCTCGGCGCCCCCTCGATGCTCTTAGCTGAGTGTCCCGCGG4980.1694252130573086No Hit
GCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTG4390.1493527480565431No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)