FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008158134

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008158134
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512211
Total Bases87.6 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGC8090.15794272282321153No Hit
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG6760.13197686109825835No Hit
CTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCA5850.1142107451811851No Hit
GTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTTATTACA5600.10932994410506607No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG5300.10347298281372325No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)