FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008158184

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008158184
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2566358
Total Bases445.8 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAG47030.18325580452922No Hit
CTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGC29770.11600096323272123No Hit
TTGCCACACTGAGTGAGCTGCACTGTGACAAGCTGCACGTGGATCCTGAG26510.10329813689282633No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)