FastQCFastQC Report
Wed 10 Jul 2024
EGAF00008158344

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008158344
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2034588
Total Bases342.2 Mbp
Sequences flagged as poor quality0
Sequence length25-200
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTATTACAATTTTACTGGGTCTCTATTTTACCCTCCTACAAGCCTCAG33660.1654388996691222No Hit
CTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGC28860.1418468997163062No Hit
GTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTTATTACA23670.11633804976732391No Hit
CTATTTTACCCTCCTACAAGCCTCAGAGTACTTCGAGTCTCCCTTCACCA21940.10783509978432981No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)